Hi Doug, for this analysis, I would like to stay in volume space; the data are aligned to a primate volume template. I am trying to do a group analysis of the functional data as a next step (see this previous email: http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg33295.html). If I just want to smooth my data in volume space, is there a better option than spatialsmooth-sess in v5.1? Caspar
2014/1/10 Douglas N Greve <gr...@nmr.mgh.harvard.edu> > If you just want to sample your volume on the surface and smooth it there, > use mri_vol2surf with --surf-fwhm. Send me your command line when you have > one and I'll verify it is the right thing. > doug > > > > On 01/09/2014 10:21 PM, Caspar M. Schwiedrzik wrote: > >> Hi Doug, I found a way to build it in myself. I am using >> spatialsmooth-sess from v5.1. I need to smooth some functional data that I >> have preprocessed through some other program until this point. >> What should I be using instead of spatialsmooth-sess if I only want to >> smooth? >> Thanks, Caspar >> >> On Thursday, January 9, 2014, Douglas Greve wrote: >> >> >> No, sorry. Why are you using such an old version? >> doug >> >> >> >> >> >> On 1/9/14 5:26 PM, Caspar M. Schwiedrzik wrote: >> >>> Hi Doug, >>> do you have a version of spatialsmooth-sess with the option to >>> set mask file name? >>> Thanks, Caspar >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <javascript:_e({}, 'cvml', ' >>> Freesurfer@nmr.mgh.harvard.edu');> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >> >> > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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