Hi Hugh
if you mean a single subject map, just bring up tksurfer and load the thickness as an overlay

cheers
Bruce
On Fri, 24 Jan 2014, Hugh Pemberton wrote:

Hi freesurfer crew,
 
I found some details through thiswebsite 
http://www.stat.uchicago.edu/faculty/InMemoriam/worsley/research/su
rfstat/index.htm about cortical thickness maps with freesurfer. I have done
some reading but can't really make much sense of how I might do this for a
single subject through freesurfer. I have already done autorecon 2 and 3 and
so have the cortical thickness stats but would like to put it into a map
such as this one:
 
[Click to enlarge image]
 
Could you possibly advise on how I might go about this? Would be much
appreciated.
 
Many thanks and all the best,
Hugh

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