Defect-seg is what I was looking for. Thanks Bruce.

-----Original Message-----
From: Bruce Fischl [mailto:[email protected]] 
Sent: Saturday, 25 January 2014 12:36 AM
To: Chris Adamson
Cc: [email protected]
Subject: Re: [Freesurfer] defect_labels to volume

have you tried mri_surf2vol?
On Fri, 24 Jan 2014, Chris Adamson wrote:

> 
> Is there a way of making a volume like aparc+aseg with the defect 
> labels so that cortical region where the defects are show up red?
> 
>  
> 
> Dr Chris Adamson
> Research Officer, Developmental Imaging, Murdoch Childrens Research 
> Institute Murdoch Childrens Research Institute Royal Children’s 
> Hospital Flemington Road, Parkville, Victoria  3052, Australia 
> www.mcri.edu.au
> 
> E   [email protected]
> T   03 9936 6780
> 
>  
> 
> 
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