and can you send us the output?
On Mon, 3 Feb 2014, Jonathan Holt wrote:
All,
[1]+ Exit 1 nohup make_average_subject --subjects
s_090803sk.long.SKtemplate/ s_091202sk.long.SKtemplate/ >&test.log
On Mon, Feb 3, 2014 at 3:28 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
Hi Jon
can you include your entire command line so we can see it?
thanks
Bruce
On Mon, 3 Feb 2014, Jonathan Holt wrote:
Bruce,
I tried again on a set of different subjects, it
error'd out once again. I
have write permission, this is the same directory
I've been using for quite
some time, and I am positive there is space on the
drive.
These are the last 50 or so lines of the output
before it stops:
mghWrite(/net/data4/ALSSCI/FreeSurfer201211/FreeSurfer/LONG_STUDY_2/average
/tmp/make_average_vol-tmp-28460/orig-s_090803sk.long.SKtemplate/.mgh,
-1):
could not open file
---------------------------------
Applying LTAtransformInterp (resample_type 1)
writingto/net/data4/ALSSCI/FreeSurfer201211/FreeSurfer/LONG_STUDY_2/average/tmp/ma
ke
_average_vol-tmp-28460/orig-s_090803sk.long.SKtemplate/.mgh...
ERROR:
failurewriting/net/data4/ALSSCI/FreeSurfer201211/FreeSurfer/LONG_STUDY_2/average/t
mp/make
_average_vol-tmp-28460/orig-s_090803sk.long.SKtemplate/.mgh
/net/data4/ALSSCI/FreeSurfer201211/FreeSurfer/LONG_STUDY_2
I'm confused as to why it's looking for a nameless
.mgh file, or perhaps
that is normal. This is my first usage for
make_average_subject.
Jon
On Sat, Feb 1, 2014 at 5:54 PM, Bruce Fischl
<fis...@nmr.mgh.harvard.edu>
wrote:
Hi Jon
usually that means that either the partition
is full or you
don't have permission. If that's not the case
you will need to
give us more details
Bruce
On Sat, 1 Feb 2014, Jonathan Holt wrote:
Hello FS experts,
I’m trying to make an average subject and I
had an
unfortunate error during the mri_convert
stage,
specifically an mghWrite error. I failed to
save the
output so I cannot recall the exact details,
are there any
specific things I should be looking out for to
prevent
this?
best,
Jon
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