Then it's no surprise that the error doesn't occur in 5.2, because 5.2
doesn't run dmri_motion at all.
When you run dmri_motion on the command line, do you use the same syntax
as the one you're showing below?
On Thu, 20 Feb 2014, Gerit Pfuhl wrote:
yes,
it happens at trac-all -qa after loading the *.nii file (see attachment) or
when run as
dmri_motion --dwi dwi_orig.nii.gz --mat dwi.ecclog --bval dmri/bvals --out
dwi_motion.txt immediately.
On 20 February 2014 17:08, Anastasia Yendiki <ayend...@nmr.mgh.harvard.edu>
wrote:
Does the error in trac-all -prep with 5.3 occur when dmri_motion is run
or at a different step?
On Thu, 20 Feb 2014, Gerit Pfuhl wrote:
Dear Tracula Experts,
after careful checking we still cannot run trac-all -qa or
dwri-motion as the command
always returns: could not
open bvals but the same file is flawlessy opened/retrieved in
version 5.2.
[cat bvals is fine, trac-all -prep in 5.2. runs fine, trac-all
-prep in 5.3 returns could
not open bvals]
Kind regards
Gerit Pfuhl
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