yep, you'll need a new version of mri_segstats, which you can find by following the thread that Louis posted doug On 02/26/2014 12:32 PM, Louis Nicholas Vinke wrote: > Hi Sabin, > What command did you run? Sending the recon-all.log file in the > scripts dir might be a little more helpful. It's failing because the > ribbon.mgz does not exist which requires surfaces. > > This thread might be relevant: > http://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg32876.html > > > -Louis > > On Wed, 26 Feb 2014, sabin khadka wrote: > >> Hi Doug, >> I tried running autorecon2 after successful autorecon1, however it >> crashed. I could not figure out why it crashed and how to fix it. Any >> suggestions. >> I've attached log file of autorecon2 >> >> -Sabin >> >> >> >> On Tuesday, February 25, 2014 10:47 AM, Douglas Greve >> <gr...@nmr.mgh.harvard.edu> wrote: >> >> You did not run it all the way through (you stopped at autorecon2) >> doug >> >> >> On 2/25/14 9:00 AM, sabin khadka wrote: >> >> Thanks Doug. recon-all.log is attached herewith. >> >> >> >> On Monday, February 24, 2014 5:07 PM, Douglas N Greve >> <gr...@nmr.mgh.harvard.edu> wrote: >> >> are you sure it did not fail? Can you post the recon-all.log file to the >> list? >> >> >> On 02/24/2014 04:22 PM, sabin khadka wrote: >> > Hi all, >> > I ran recon-all -all and all the subjects finished without any error. >> > However in few subjects directory, labels sub-directory only have >> > lh.cortex.label and rh.cortex.label and not other label files like >> > *.label and *.annot. Could anyone help me on how to fix this. >> > >> > -Sabin >> >> > >> > >> > >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to >> whom it is >> addressed. If you believe this e-mail was sent to you in error and >> the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to >> you in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >> >> > >
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
