Hi Saurabh
I didn't realize you meant the subfields. For that you'll need Koen or
Eugenio to answer.
You are probably seeing the cc in freeview because that is the default
slice it shows, but you should be able to scroll around and see other stuff
cheers
Bruce
On Fri, 28 Feb 2014, Saurabh Thakur wrote:
Thanks for such quick reply Bruce,
I am saying i am using these file , referring to feesurfer website.
cd $SUBJECTS_DIR/bert/mri freeview nu.mgz -p-labels posterior_left_*
posterior_Left-Hippocampus.mgz -p-labels posterior_right_*
posterior_Right-Hippocampus.mgz -p-prefix posterior_ -p-lut
$FREESURFER_HOME/FreeSurferColorLUT.txt
which contains nu.mgz, posterior_Left-Hippocampus.mgz
,posterior_Right-Hippocampus.mgz
when i am using aseg.mgz i am seeing corpus collosum in free viewer, why is
it so...?
And I will try to use commands which u referred and get back to you.
cheers
Saurabh Thakur,
On Fri, Feb 28, 2014 at 6:44 PM, Bruce Fischl <[email protected]>
wrote:
Hi Saurabh
I'm not sure what you mean by "the main volume", but the
hippocampus is segmented in the aseg.mgz. You can extract it
from there using mri_extract_label or mri_binarize --match
cheers
Bruce
On Fri, 28 Feb 2014, Saurabh Thakur wrote:
Hello Freesurfer expert,
I have done Hippo campus segmentation using
Freesurfer.
Can u tell me how to extract the only Hippo campus
volume from nu.mgz
Why only nu.mgz is used for the main volume--is
there some specific reason
to use?
Thanks in advance ,
Saurabh Thakur,
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