Hi Marie, The ?h.pial_lgi.fwhm?.fsaverage.mgh files in the surf folder are there. Here is the output when I run more ~/.Qdecrc:
# This file is automatically generated by the application # If you change any lines or add new lines, note that all # coments and empty lines will be deleted. Every line has # to be in format: # key = value # Qdec1\Dialogs\ExitApplication = 0 Qdec1\Dialogs\SendErrorLog = 0 Qdec1\Geometry\MainPanelSize = 375 Qdec1\Geometry\MainPanelVisibility = 1 Qdec1\Geometry\SaveUserInterfaceGeometry = 1 Qdec1\Geometry\SecondaryPanelSize = 250 Qdec1\Geometry\SecondaryPanelVisibility = 0 Qdec1\Geometry\ViewPanelPosition = Right Qdec1\Geometry\WindowGeometry = 900x700+787+1 Qdec1\MRU\File00 = /Applications/freesurfer/subjects/qdec/qdec.tableNoBV45orBV46.dat Qdec1\MRU\File00Cmd = LoadDataTable Qdec1\RunTime\MostRecentVersionLaunched = 1.4 Qdec1\RunTime\PrintTargetDPI = 100.000000 Qdec1\RunTime\ShowBalloonHelp = 1 Qdec1\RunTime\ShowSplashScreen = 1 Qdec1\RunTime\ToolbarFlatButtons = 1 Qdec1\RunTime\ToolbarFlatFrame = 1 Thanks! Krista On Wed, Feb 26, 2014 at 7:12 PM, Marie Schaer <marie.sch...@unige.ch> wrote: > > Hi Krista, > > Can you please run: > more ~/.Qdecrc > and copy paste the output for me? > > The "rm: No match" issue in the qcache is not a problem, it's > independent from the issue of listing lGI in the qdec menu. Even with the > no match output in the qcache command, all the files should have been > created properly (you can check that you have some files named > ?h.pial_lgi.fwhm?.fsaverage.mgh in the surf folder of one of your subject > if you want to be sure. > > Let me know, > > Marie > > On Feb 25, 2014, at 6:55 PM, krista kelly <krista.kell...@gmail.com> > wrote: > > Hi Marie, > > I have tried adding the .Qdecrc file into the home folder as well but > that does not work. The lgi measure is not appearing in the dropdown menu > in the design tab in Qdec. Further, when I ran recon-all -qcache -measure > pial_lgi, there were error messages saying 'rm: No match', although the > -qcache exited without errors. Could this be the problem? If not, does > anyone have any ideas? > > Thanks! > Krista > > > On Mon, Feb 24, 2014 at 4:29 PM, Marie Schaer <marie.sch...@unige.ch>wrote: > >> >> Hi Krista, >> >> Can you be more specific about what is not coming up? If lGI not listed >> in the menu of qdec, look at the following post: >> http://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg33427.html >> >> Otherwise can you describe more precisely the issue? >> >> Best, >> >> Marie >> >> On Feb 24, 2014, at 1:21 PM, krista kelly <krista.kell...@gmail.com> >> wrote: >> >> > Hello, >> > >> > I followed instructions on how to incorporate the lgi_pial measure into >> QDec, however, it's not coming up when I go to choose this as a measure. I >> ran recon-all -s my_subject_id -qcache -measure pial_lgi and created a >> Qdecrc file in my $SUBJECTS_DIR directory. Does anyone have any insight as >> to why this may be occurring? >> > >> > Thanks, >> > Krista >> > _______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> > >> > The information in this e-mail is intended only for the person to whom >> it is >> > addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> > contains patient information, please contact the Partners Compliance >> HelpLine at >> > http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> > but does not contain patient information, please contact the sender and >> properly >> > dispose of the e-mail. >> >> > >
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