Hi Claudia, I don't know of anyone using it for rodents. In general, it 
is highly tuned to the parameters of the primate (mostly human) brain, 
and I think it would be quite difficult to adapt it to rodents. I'm 
cc'ing the FS list in case someone else has anything to add.
doug

On 03/05/2014 03:09 AM, Falfan-Melgoza, Claudia wrote:
> Dear Dr. Greve,
>
> I work at the Central Institute of Mental Health in Mannheim, Germany 
> and I am quite sure you have heard this question to no end but I would 
> like to ask you how viable would it be to use Freesurfer for rats and 
> mice?, I have read that providing an atlas of the rodent brain would 
> be the first step but as a first timer attempting to use Freesurfer I 
> am not quite sure that would cut it, or if the next steps in the 
> pipeline would need also a good amount of modification. And one last 
> question, do you know of other software that in your opinion could be 
> more suitable for rodents?
>
> I appreciate greatly your time and thank you very much in advance,
>
> Claudia Falfan-Melgoza
>
>
>
>
>
> Central Institute of Mental Health
> J5- 68159
> Mannheim, Germany

-- 
Douglas N. Greve, Ph.D.
MGH-NMR Center
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