Thxs for all the help.
On March 13, 2014 at 2:19:16 PM, Louis Nicholas Vinke (vi...@nmr.mgh.harvard.edu<mailto:vi...@nmr.mgh.harvard.edu>) wrote: Attached are examples of the bvals.dat and bvecs.dat files extracted from siemens dicoms by dt_recon. This was for a 60 dir DTI scan w/ 10 b0s. On Thu, 13 Mar 2014, Chris Watson wrote: > dcm2nii should give you bvecs and bvals > If you just want to transpose the file, I wrote a script to do it (attached). > > On 03/13/2014 04:50 PM, Gennan Chen wrote: > > Anastasia, > > The thing not clear from me is the format for those files. I did not see an > example anywhere in t > he wiki or in the distribution. And I am downing tutorial data now. Hope it > is there. BTW, do yo > u have an example? I know how to get those from private dicom tags. > > Gen > > -----Original Message----- > From: Anastasia Yendiki [mailto:ayend...@nmr.mgh.harvard.edu] > Sent: Thursday, March 13, 2014 1:37 PM > To: Gennan Chen > Cc: freesurfer@nmr.mgh.harvard.edu > Subject: Re: [Freesurfer] bvals and bvecs for dt_recon > > > How is the format different? Is it in 3 rows instead of 3 columns? If so, it > should be straightfo > rward to convert it yourself from 3 rows to 3 columns. > > On Thu, 13 Mar 2014, Gennan Chen wrote: > > Hi! All, > > Is there an utility to extract bvals and bvecs from GE’s DTI dicom > files into the format dt_recon can use? I try to run dt_recon as it is > but it did not pick up those values. Those files are from ADNI. > > Gen > > ______________________________________________________________________ > ______ This email message is for the sole use of the intended > recipient(s) and may contain confidential and privileged information. > Any unauthorized review, use, disclosure or distribution is > prohibited. If you are not the intended recipient, please contact the > sender by reply email and destroy all copies of the original message. > If you are the intended recipient, please be advised that the content > of this message is subject to access, review and disclosure by the > sender's Email System Administrator > > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you be > lieve this e-mail was sent to you in error and the e-mail contains patient > information, please co > ntact the Partners Compliance HelpLine at > http://www.partners.org/complianceline . If the e-mail > was sent to you in error but does not contain patient information, please > contact the sender and > properly dispose of the e-mail. > > This email message is for the sole use of the intended recipient(s) and may > contain confidential > and privileged information. Any unauthorized review, use, disclosure or > distribution is prohibite > d. If you are not the intended recipient, please contact the sender by reply > email and destroy al > l copies of the original message. If you are the intended recipient, please > be advised that the c > ontent of this message is subject to access, review and disclosure by the > sender's Email System A > dministrator > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > ________________________________ ________________________________ This email message is for the sole use of the intended recipient(s) and may contain confidential and privileged information. Any unauthorized review, use, disclosure or distribution is prohibited. If you are not the intended recipient, please contact the sender by reply email and destroy all copies of the original message. If you are the intended recipient, please be advised that the content of this message is subject to access, review and disclosure by the sender's Email System Administrator
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