Hi Shahin, preproc-sess is written in a funny way that turns off volume smoothing with -per-run. The work-around is to put -fwhm after -per-run
doug On 03/14/2014 11:36 PM, SHAHIN NASR wrote: > I am trying to preproc-sess my data (fwhm 1.5, per-run, native space) > with this command > > preproc-sess -fwhm 1.5 -fsd bold -per-run > > I expect it to generate fmcpr.sm1.5.nii.gz for each run of my dataset. > Although preproc-sess finishes without any error, it only generates > fmcpr.nii.gz and when I run selxavg3-sess, it returns an error that > > > cannot determine format of > > test/bold/013/fmcpr.sm1.5 > > and exits. Would you tell me why those files are not generated? > > Regards > > -- > Shahin Nasr > > PhD in Cognitive Neuroscience > Martinos Imaging Center, MGH > Harvard Medical School > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
