I think it is just confused because it expects native to be per-session. One way around this is to just specify -nuis mcprextreg instead of -mcprextreg doug
On 03/19/2014 11:15 AM, sha...@nmr.mgh.harvard.edu wrote: > But this is a per-run analysis and preproc-sess is -per-run (in native > space). I assumed that I have to change my mkanalysis-sess to this: > > mkanalysis-sess -analysis ColorPrj_TR4_1p5mm_PR_ANOVA -fwhm 1.5 -paradigm > Conds.par -native -event-related -polyfit 2 -gammafit 2.25 1.25 > -mcprextreg -TR 4 -nconditions 8 -refeventdur 14 -force -fsd bold_Color > -per-run > > > But using -mcprextreg flag generates an error. Is it a bug? > > >> There is not an mcextreg file there. There is mcprextreg file. I think >> you need to run preproc with -per-session to get the mcextreg file >> doug >> >> On 03/18/2014 02:34 PM, SHAHIN NASR wrote: >>> Hi, >>> When I run selxavg3-sess, I face this error: >>> >>> ERROR: cannot find volume matching >>> /autofs/cluster/tootell/pitcairn/1/shahin/ColorPrj/7T/Sbj/myla2/bold_Color/013/mcextreg >>> ERROR: loading nonpar reg >>> /autofs/cluster/tootell/pitcairn/1/shahin/ColorPrj/7T/Sbj/myla2/bold_Color/013/mcextreg >>> ------------------------------------------ >>> ERROR: fast_selxavg3() failed\n >>> >>> I repeated the preproc-sess from scratch and it worked fine, >>> finished without any problem and I still get the same error. I even >>> check the registration in this run and it fine. >>> >>> Now I am wondering why do I see this error for this subjects (and >>> why I don't see it for the other subjects)? >>> >>> Regards >>> -- >>> Shahin Nasr >>> >>> PhD in Cognitive Neuroscience >>> Martinos Imaging Center, MGH >>> Harvard Medical School >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ >> >> >> > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
