Hi Andrea will it fit in 256? You can try specifying -cw256
cheers Bruce On Wed, 9 Apr 2014, Andrea Tateo wrote:
Hi Bruce, thanks for the quick response. I report the full error message: WARNING==================++++++++++++++++++++++++================================= ====== The physical sizes are (256.00 mm, 256.00 mm, 312.00 mm), which cannot fit in 256^3 mm^3 volume. The resulting volume will have 312 slices. If you find problems, please let us know (freesurfer@nmr.mgh.harvard.edu). ==================================================++++++++++++++++++++++++= ============== $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $ reading from/lustre/home/tateo/Simulazione_FREESURF_GRID_2/Segmentazione/SUB_1006_3/001 /mri/rawavg.mgz... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, -0) j_ras = (0, 0, -1) k_ras = (-0, 1, -0) Original Data has (1, 1, 1) mm size and (256, 256, 312) voxels. Data is conformed to 1 mm size and 312 voxels for all directions changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram Reslicing using trilinear interpolation writing to/lustre/home/tateo/Simulazione_FREESURF_GRID_2/Segmentazione/SUB_1006_3/001 /mri/orig.mgz... **************************************** ERROR! FOV=312.000 > 256 Include the flag -cw256 with recon-all! Thank you very much Andrea ----Messaggio originale---- Da: fis...@nmr.mgh.harvard.edu Data: 9-apr-2014 14.45 A: "Andrea Tateo"<andrea.ta...@virgilio.it>, "Freesurfer support list"<freesurfer@nmr.mgh.harvard.edu> Ogg: Re: [Freesurfer] Problem of size Hi Andrea what size are your voxels? Do you really need an FOV that big? If not, you could extract the central 256mm using mri_extract. And I believe this is just a warning - does recon-all complete? cheers Bruce On Wed, 9 Apr 2014, Andrea Tateo wrote: > > Hi FreeSurfer expert, > > I have a problem with command "recon-all". > > In recon-all.log I can read: > > «The physical sizes are (256.00 mm, 256.00 mm, 312.00 mm), which cannot fit > in 256^3 mm^3 volume. > > The resulting volume will have 312 slices. > > If you find problems, please let us know (freesurfer@nmr.mgh.harvard.edu).» > > I hope are there anyone to help me. > > Thank for your help. > > Andrea > > > The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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