Hello Freesurfer Experts,
Having morphed the surface data to fsaverage for individuals in our group of
subjects, we need to convert MEG dSPM paint files of surface data to volume
.nii format. I have attempted this using the following syntax and keep coming
up with the subsequent errors:
mri_surf2vol --surfval .${STC_DIR}/${SUBJECT}${STC_MORPH_SUFFIX}-30_45_80
--hemi lh --volreg ${SUBJECTS_DIR}/fsaverage/mri.2mm/reg.2mm.dat --template
${SUBJECTS_DIR}/fsaverage/mri/orig.mgz --outvol
${NII_DIR}/${SUBJECT}${STC_MORPH_SUFFIX}-lh.mgz
# Right Hemisphere
mri_surf2vol --surfval .${STC_DIR}/${SUBJECT}${STC_MORPH_SUFFIX}-30_45_80
--hemi rh --volreg ${SUBJECTS_DIR}/fsaverage/mri.2mm/reg.2mm.dat --template
${SUBJECTS_DIR}/fsaverage/mri/orig.mgz --outvol
${NII_DIR}/${SUBJECT}${STC_MORPH_SUFFIX}-rh.mgz
gdiagno = -1
ERROR: cannot recognize the type of ./export/........to lh dspm paint file
gdiagno = -1
ERROR: cannot recognize the type of ./export/........to rh dspm paint file
ninputs = 2
Is there a format flag that one can put after the --surfval option so that the
type would be recognized? I entered " ./ " before the path as the
documentation says but from here I can't find a solution.
Thank you,
Franklin
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