Hi Melly, The LGI has the same format as the thickness files, so you can extract them using mris_anatomical_stats (providing you have your own annotation). The command will look something like:
mris_anatomical_stats -a $SUBJ/label/YOUR_ANNOT -t $SUBJ/surf/?h.pial_lgi -f $SUBJ/stats/OUTPUT_FILE $SUBJ ?h Hope it helps, Marie On Jul 19, 2014, at 7:29 AM, melinda dora <mellyd...@outlook.com<mailto:mellyd...@outlook.com>> wrote: Dear freesurfer group, is there a command to extract lobar gyrification values for each subject? If so please what are the steps? if Ive already created the lobar annotation labels, can I extract gyrifaction with these if I have already passed the gyrification command? Best, Melly _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu<mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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