Thank Bruce. I have uploaded the case to transfer/incoming in surfer.nmr.mgh.harvard.edu My file is missingRightParcLabels.tar.gz Mehul
On Fri, Aug 15, 2014 at 3:17 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Sure, upload it and one of us will take a look > > Bruce > > On Aug 15, 2014, at 10:28 me PM, Mehul Sampat k<mpsam...@gmail.com> wrote: > > Hi Bruce, > rh.aparc.stats looks good and also rh.aparc.a2009s.stats looks correct. > However, both aparc+aseg.mgz and aparc.a2009s+aseg.mgz have the issue with > missing parcellation labels in right hemisphere. > > Also I suspect the issues starts occurring in rh.ribbon.mgz and ribbon.mgz > (missing labels). > (lh.ribbon.mgz is fine) > > I tried to recreate the rh.ribbon.mgz and ribbon.mgz files using the > command below and I am able to reproduce the issue. > mris_volmask <http://freesurfer.net/fswiki/mris_volmask> --label_left_white > 2 --label_left_ribbon 3 --label_right_white 41 --label_right_ribbon 42 > --save_ribbon --save_distance <subjid> > > I can upload the data if you would like to take a look. > Thanks > Mehul > > > > On Fri, Aug 15, 2014 at 1:54 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > >> How does the rh.aparc look? >> >> On Aug 14, 2014, at 8:13 PM, Mehul Sampat <mpsam...@gmail.com> wrote: >> >> Hi Folks, >> We have a strange error for one case. For one case there are missing >> cortical parcellation labels in aparc+aseg.mgz file in the right hemisphere >> (see screenshots) >> >> I looked at the recon-all.log file and no errors are reported. >> Also I recreated aparc+aseg.mgz file using the following command but the >> issue persists: >> mri_aparc2aseg --s subjid --volmask >> I looked at the rh.white and rh.pial and those look good. I cannot figure >> out what would cause such an issue ? I was wondering if anyone has seen >> something similar ? >> Thanks >> Mehul >> >> >> >> >> >> <missing-parcellation-10591037.png> >> >> <s3061-s10591037-img3.png> >> >> <s3061-s10591037-img2.png> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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