Hi Emily - Yes, this is fine. I just meant that it shouldn't look like a single line.
a.y On Thu, 24 Jul 2014, ebell...@uwm.edu wrote: > Hi Anastasia, > > Just to be clear, is this what you mean by a more diffuse volumetric > distribution. Here is a snapshot of the right inferior longitudinal > fasiculous. > > I am just getting a better sense of what to look for in terms of bad vs. good > tracts. > > Emily > > ----- Original Message ----- > From: "Anastasia Yendiki" <ayend...@nmr.mgh.harvard.edu> > To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> > Sent: Wednesday, July 16, 2014 4:54:29 PM > Subject: Re: [Freesurfer] Tracula : Path not entirely in the white matter > > > Hi Emily - This is not necessarily a problem. To make sure, you can check > the output path.pd.nii.gz file from that specific tract. If it got stuck > somewhere (e.g., because the brain mask is missing a bit of brain that > this tract should go through) then the path.pd.nii.gz will look like a > single curve rather than a more diffuse volumetric distribution. > > Hope this helps, > a.y > > On Wed, 16 Jul 2014, ebell...@uwm.edu wrote: > >> Hello, >> >> I was looking at a trac-all log file to get my bearings on what is being >> done and making sure things were done successfully, >> >> I did not get any errors for this subject but when I was looking at the >> right uncinate fasciculus: It would say "Path from initial control points >> not entirely in the white matter" and then it attempted to perturb control >> points. >> >> I noticed that for this tract, it did not say that it did not say sucess >> after how ever many control points. It just said that it reverted back to >> the initial control points. >> >> Do I then need to be concerned about the validity of this particular tract >> for this subject? >> >> Thanks, >> >> Emily >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
