Hi Robby,
depends on what you are trying to achieve.
The first stats model we implemented was the 2-stage model (with a
linear fit inside each subject and then a cross sectional comparison of
the atrophy rates, ie. slopes of the fit). For the first step the
surface data (within-subject) is already in a common space (although not
smoothed yet) and no qcache is needed and for the second step it cannot
be done without first doing the first step.
Now we also have tools for linear mixed effects modelling. For that we
need all data (all time points from all subjects) in the fsaverage
space. Try using the -qcache command on the longitudinal directories
(e.g. together with the --long flag etc). That should do the trick.
Best, Martin
On 11/04/2014 07:27 AM, Robby De Pauw wrote:
Dear FS-experts
Is there any command that I can use for caching my preprocessed data
in the recon-all longitudinal stream, since this is possible through
adding the -qcache option in the cross-sectional pipeline. Or maybe
this is already automatically done without adding any option to the
command?
Thank you
Greeting
Robby
Robby De Pauw, drs.
*Ghent University*
Department of Physiotherapy and Rehabilitation Sciences
3B3
De Pintelaan 185
B-9000 Ghent
robby.dep...@ugent.be <mailto:robby.dep...@ugent.be>
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Dr. Martin Reuter
Instructor in Neurology
Harvard Medical School
Assistant in Neuroscience
Dept. of Radiology, Massachusetts General Hospital
Dept. of Neurology, Massachusetts General Hospital
Research Affiliate
Computer Science and Artificial Intelligence Lab,
Dept. of Electrical Engineering and Computer Science,
Massachusetts Institute of Technology
A.A.Martinos Center for Biomedical Imaging
149 Thirteenth Street, Suite 2301
Charlestown, MA 02129
Phone: +1-617-724-5652
Email:
mreu...@nmr.mgh.harvard.edu
reu...@mit.edu
Web : http://reuter.mit.edu
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
