Hi Doug, thanks for the answer. I have both, 2 runs of polar angle and 2 of eccentricity.
Francesca On Monday, November 10, 2014, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > > There are a bunch of columns in the design matrix that are 0, meaning > that it expects some kind of stimulus to be there but it was not in the > parfile. Do you only have eccen for this or do you also have polar? > doug > > > On 11/08/2014 11:25 AM, Francesca Strappini wrote: > > Hi, I attached the file, thank you! > > > > Best > > Francesca > > > > 2014-11-06 18:58 GMT+02:00 Douglas N Greve <gr...@nmr.mgh.harvard.edu > <javascript:;> > > <mailto:gr...@nmr.mgh.harvard.edu <javascript:;>>>: > > > > > > Can you send me > > > > /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh/Xtmp.mat > > > > On 11/06/2014 09:53 AM, Francesca Strappini wrote: > > > Dear all, > > > > > > I'm trying to run a retinotopy analysis in several subjects but it > > > crashed with an error in one subject. I ran this command line: > > > > > > selxavg3-sess -a rtopy.HS.rh -s SUBJ09 > > > > > > > > > and this is the last part of the output with the error message. > > > Any help would be much appreciated. > > > > > > Best > > > Francesca > > > > > > > > > < M A T L A B (R) > > > > Copyright 1984-2013 The MathWorks, Inc. > > > R2013b (8.2.0.701) 64-bit (glnxa64) > > > August 13, 2013 > > > > > > ---------------------------------------------------- > > > Your MATLAB license will expire in 56 days. > > > Please contact your system administrator or > > > MathWorks to renew this license. > > > ---------------------------------------------------- > > > > > > To get started, type one of these: helpwin, helpdesk, or demo. > > > For product information, visit www.mathworks.com > > <http://www.mathworks.com> > > > <http://www.mathworks.com>. > > > > > > >> >> >> >> >> >> >> > > > sxa3pwd = > > > > > > /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed > > > > > > >> > > > sxa3cmd = > > > > > > /usr/local/freesurfer/fsfast/bin/selxavg3-sess -a rtopy.HS.rh -s > > SUBJ09 > > > > > > >> /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m > > > >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> >> > > > > > > #@# SUBJ09 ############################### > > > /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09 > > > ------------------------- > > > $Id: fast_selxavg3.m,v 1.100.2.2 2012/11/30 18:40:38 greve Exp $ > > > /usr/local/freesurfer/fsfast/toolbox/fast_selxavg3.m > > > /usr/local/freesurfer/fsfast/toolbox/fast_ldanaflac.m > > > /usr/local/freesurfer/matlab/MRIread.m > > > ------------------------- > > > outtop = /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed > > > Extension format = nii.gz > > > nruns = 4 > > > autostimdur = > > > > > > > > > outanadir = > > > > > > /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh > > > Found 110059/126364 (87.1) voxels in mask > > > Creating Design Matrix > > > ... creation time = 0.005 sec > > > DoMCFit = 1 > > > ntptot = 960, nX = 36, DOF = 924 > > > Saving X matrix to > > > > > > > /usr/local/freesurfer/fsfast/MeytalRetinotopySmoothed/SUBJ09/bold/rtopy.HS.rh/Xtmp.mat > > > Error using svd > > > Input to SVD must not contain NaN or Inf. > > > > > > Error in cond (line 36) > > > s = svd(A); > > > > > > Error in fast_selxavg3 (line 279) > > > XCond = cond(XtX); > > > > > > > > > -- > > > Francesca Strappini, Ph.D. > > > Neurobiology Department > > > Weizmann Institute of Science > > > 234 Herzl Street, Rehovot 7610001 Israel > > > Tel.: +972 58 444 2584 > > > E-mail: francesca.strapp...@weizmann.ac.il <javascript:;> > > <mailto:francesca.strapp...@weizmann.ac.il <javascript:;>> > > > <mailto:francesca.strapp...@weizmann.ac.il <javascript:;> > > <mailto:francesca.strapp...@weizmann.ac.il <javascript:;>>> > > > > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu <javascript:;> > > <mailto:Freesurfer@nmr.mgh.harvard.edu <javascript:;>> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > -- > > Douglas N. Greve, Ph.D. > > MGH-NMR Center > > gr...@nmr.mgh.harvard.edu <javascript:;> <mailto: > gr...@nmr.mgh.harvard.edu <javascript:;>> > > Phone Number: 617-724-2358 <tel:617-724-2358> > > Fax: 617-726-7422 <tel:617-726-7422> > > > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > Outgoing: > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <javascript:;> <mailto: > Freesurfer@nmr.mgh.harvard.edu <javascript:;>> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to > > whom it is > > addressed. If you believe this e-mail was sent to you in error and > > the e-mail > > contains patient information, please contact the Partners > > Compliance HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to > > you in error > > but does not contain patient information, please contact the > > sender and properly > > dispose of the e-mail. > > > > > > > > > > -- > > Francesca Strappini, Ph.D. > > Neurobiology Department > > Weizmann Institute of Science > > 234 Herzl Street, Rehovot 7610001 Israel > > Tel.: +972 58 444 2584 > > E-mail: francesca.strapp...@weizmann.ac.il <javascript:;> > > <mailto:francesca.strapp...@weizmann.ac.il <javascript:;>> > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <javascript:;> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu <javascript:;> > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <javascript:;> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 E-mail: francesca.strapp...@weizmann.ac.il
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
