Hi Freesurfer experts,
I just want to try cluster level threshold by cluster size, but not by mc
simulation.
So I tried the command like : mri_surfcluster --in sig.nii.gz --subject
fsaverage --hemi lh --annot aparc --sign pos --minarea 50 --sum
area50.pos.cluster.summary --o area50.pos.cluster.nii.gz --thmin 1.3
However, I found that the command did not set the non-cluster vertices to
zero.
The help of mri_surfcluster says that this command currently only supports
paint (or w) format for input and output. I converted the sig.nii.gz to sig.w
using
mri_surf2surf --s fsaverage --hemi lh --sval sig.nii.gz --tval sig.w
--trg_type paint.
But command mri_surfcluster could not read the paint file.
Could anyone help me?
Thanks!
Zhiwei
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
