Thanks for the advice. I thought I would like to use mri_surf2vol, but I am a little confused about the parameters and how they relate to what the retinotopy analysis outputs.
To be explicit, I want to view the real.nii.gz and imag.nii.gz files in an individual's volumetric space. I can load these as overlays to the inflated surface using tksurfer <subject> <hemisphere> inflated. Then I can configure the overlay to use a color wheel color scale and display as complex to see the retinotopic mapping. I'm not sure how I would go about using mri_surf2vol to recreate this map in volumetric space. Should I just use real.nii.gz and imag.nii.gz as surfval? Where is the registration file outputted in a retinotopy analysis? Thank you for any more help that you can provide, Ben On Mon, Dec 15, 2014 at 3:26 PM, dgw <dgwake...@gmail.com> wrote: > > Hi Ben, > > You should be able to map it back with mri_surf2vol. I haven't done > this, but the wiki page looks fairly detailed: > http://surfer.nmr.mgh.harvard.edu/fswiki/mri_surf2vol > > HTH > D > > On Mon, Dec 15, 2014 at 3:43 PM, Benjamin Zimmerman > <benjamin.zimmerm...@gmail.com> wrote: > > Hi all, > > > > FsFast has an excellent individual retinotopy analysis that allows me to > see > > phase data on the inflated surface of the brain. Is there a way to view > the > > results of the retinotopy analysis in the subject's original volumetric > > space rather than on the subject's surface space? > > > > Thank you for any help, > > > > Ben > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom > it is > > addressed. If you believe this e-mail was sent to you in error and the > > e-mail > > contains patient information, please contact the Partners Compliance > > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to you > in > > error > > but does not contain patient information, please contact the sender and > > properly > > dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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