Hi and thanks Martin for your help, I am trying to do mixed effect analysis, should I use the registered to template data for this ( sub1-t1.long.tempsub1 and sub1-t2.long.tempsub1) and how should the aded.table.dat look like? Do I need to run :
mris_preproc --qdec-long qdec.table.dat --target study_average --hemi lh --meas thickness --out lh.thickness.mgh mri_surf2surf --hemi lh --s study_average --sval lh.thickness.mgh --tval lh.thickness_sm10.mgh --fwhm-trg 10 --cortex --noreshape
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