Hi list, I'm performing the FS-FAST analysis. Some months ago, I have already preformed this analysis on some subjects without problem. Now, I have added some subjects. When I rerun the analysis i have these error: for isxconcat-sess -sf sessidlist —analysis fc.lthalseed.surf.lh -contrast L_Thalamus -o my-group_thal_LHERROR: finding sessionsSess47 /Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess15 /Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess48 /Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess49 /Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess50[iMac-di-Stefano:freesurfer/subjects/FUNCTIONAL_DATA] Stefano% and for isxconcat-sess -s Sess01 -s Sess02 -s Sess03 -s Sess04 -s Sess05 -s Sess06 -s Sess07 -s Sess08 -s Sess09 -s Sess10 -s Sess11 -s Sess12 -s Sess13 —s Sess14 -s Sess15 -s Sess16 -s Sess30 -s Sess31 -s Sess32 -s Sess33 -s Sess34 -s Sess35 -s Sess36 -s Sess37 -s Sess39 -s Sess40 -s Sess41 -s Sess42 -s Sess43 -s Sess44 -s Sess45 -s Sess46 -s Sess47 -s Sess48 —s Sess49 -s Sess50 —analysis fc.lthalseed.surf.lh -contrast L_Thalamus -o my-group_THAL_LEFTERROR: Flag —s unrecognized. FUNCTIONAL_DATA directory contains: file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/fc.lamgseed.surf.lh/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/fc.lthalseed.surf.lh/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/fc.ramgseed.surf.rh/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/fc.rthalseed.surf.rh/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/file.fsgdfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/g1g2.intercept.mtxfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/group.diff.mtxfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/group1.mtxfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/group2.mtxfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/GroupDescriptorFile%201file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/log/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/mean.L_Amygdala.configfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/mean.L_Thalamus.configfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/mean.R_Amygdala.configfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/mean.R_Thalamus.configfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess02/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess03/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess04/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess05/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess06/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess07/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess08/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess09/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess10/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess11/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess12/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess13/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess14/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess15/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess16/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess30/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess31/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess32/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess33/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess34/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess35/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess36/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess37/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess39/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess40/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess41/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess42/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess43/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess44/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess45/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess46/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess47/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess48/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess49/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess50/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/sessidlist for each subject, i.e. within Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01:file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/002/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/003/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/fc.lthalseed.surf.lh/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/fc.rthalseed.surf.rh/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/masks/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/template.logfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/template.nii.gz i.e. within Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/001:file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/f.nii.gzfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/fmcpr.mat.aff12.1Dfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/fmcpr.mcdatfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/fmcpr.nii.gzfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/fmcpr.nii.gz.mclogfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/fmcpr.sm5.fsaverage.lh.nii.gzfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/fmcpr.sm5.fsaverage.rh.nii.gzfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/fmcpr.sm5.mni305.2mm.nii.gzfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/global.meanval.datfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/global.waveform.datfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/init.register.dof6.datfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/L_Thalamus.datfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/L_Thalamus.dat.logfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/masks/file:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/mcdat2extreg.logfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/mcprextregfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/R_Thalamus.datfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/R_Thalamus.dat.logfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/register.dof6.datfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/register.dof6.dat.logfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/register.dof6.dat.mincostfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/register.dof6.dat.paramfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/register.dof6.dat.sumfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/template.logfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/template.nii.gzfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/vcsf.datfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/vcsf.dat.logfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/vcsf.dat.pca-stats.datfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/wm.datfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/wm.dat.logfile:///Applications/freesurfer/subjects/FUNCTIONAL_DATA/Sess01/rest/001/wm.dat.pca-stats.dat Is possible that some folders are lacking? Kind regards and thanks,
Stefano
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