Hello, I just wanted to give this message a bump. Thanks!
Anthony On 5/15/15 9:49 AM, Anthony Dick wrote: > Hello, > > I have been stumped by this error I keep getting using the > rebuild_gca_atlas.csh script. I am trying to build a cerebellar atlas, > so I am wondering if the problem is with the brains we parcellated, or > with my installation etc. The brains consist of manually segmented > cerebellums from the original T1. The T1 is run through Freesurfer, > and the ROIs are made in Freeview. The edited file is called > seg_edited.mgz. Things run smoothly up until this error: > > using MR volume /<path>/subjects/4/mri/brain.mgz to mask input volume... > reading 23 input volumes... > logging results to talairach_one.log > reading 'subjects/average/RB_one_2015-05-14.gca'... > gcaAllocMax: node dims 32 32 32 > gcaAllocMax: prior dims 128 128 128 > gcaAllocMax: max_labels 0 > average std = 8.4 using min determinant for regularization = 7.1 > 0 singular and 119 ill-conditioned covariance matrices regularized > reading '/<path>/subjects/4/mri/nu.mgz'... > reading '/<path>/subjects/average/RB_one_2015-05-14.gca'... > gcaAllocMax: node dims 32 32 32 > gcaAllocMax: prior dims 128 128 128 > gcaAllocMax: max_labels 0 > reading frame -1 of gca > MRIcopyFrame: src and dst must be same type > reading '/<path>/subjects/4/mri/transforms/talairach_one.lta'... > mri_read(): couldn't determine type of file > /<path>/subjects/4/mri/transforms/talairach_one.lta > mri_em_register: could not open input volume > /<path>/subjects/4/mri/transforms/talairach_one.lta. > -- Anthony Steven Dick, Ph.D. Assistant Professor Director, Cognitive Neuroscience Program and Graduate Certificate in Cognitive Neuroscience Department of Psychology Florida International University Modesto A. Maidique Campus AHC4 454 11200 S.W. 8th Street Miami, FL 33199 Ph: 305-348-4202; Lab Ph: 305-348-9055; Fx: 305-348-3879 Email: ad...@fiu.edu Webpage: faculty.fiu.edu/~adick _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
