Hi Xiaofu - The bedpostx program is not configured to run on any type of cluster with any type of queueing software. It was originally written to be run on an SGE cluster with specific queue names. The bedpostx_mgh is a modified version that also works on our PBS cluster. Making it work on additional clusters would require additional tweaks, and it's impossible for us to make it work on everyone's cluster.
In a future version, I'd like to give the option to simply print out all the necessary commands, and then it would be up to the user to figure out how to submit them as jobs on their own cluster. This is not implemented yet.
a.y On Tue, 19 May 2015, Xiaofu wrote:
Dear Sir/Madam, I tried to run Tracula in the C2B2 server at Columbia University. However, I got the following error message after submitted my job using qsub to the sever. I'd greatly appreciate it if you could help me resolve this problem. WARN: Running FSL's bedbost locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 /DTIdata/Tracula/3789/dmri subjectdir is /DTIdata/Tracula/3789/dmri Making bedpostx directory structure Queuing preprocessing stages Unable to run job: Job was rejected because job requests unknown queue "short.q". Exiting. Queuing parallel processing stage Unable to run job: Job was rejected because job requests unknown queue "long.q". Exiting. Queuing post processing stage Unable to run job: Job was rejected because job requests unknown queue "long.q". Exiting. Looking forward to hearing from you. Thank you very much. Best, Xiaofu
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