ok, it can only access the file if I type ls /scr/etsch2/kids/ct/qdec/long.qdec.table.dat (so with the forward slash)
but if I then use that path for the mris_preproc command I get nsubjects = 22 ERROR: cannot find /scr/etsch2/kids/ct/.long. ----- Ursprüngliche Mail ----- Von: "Douglas Greve" <gr...@nmr.mgh.harvard.edu> An: freesurfer@nmr.mgh.harvard.edu Gesendet: Montag, 3. August 2015 16:23:48 Betreff: Re: [Freesurfer] cannot find qdec file that is probably not the full path. Try typing ls scr/etsch2/kids/ct/qdec/long.qdec.table.dat If it says it cannot find the file, then it is not the full path. Maybe you need a forward slash (ie, "/") in the beginning? On 8/3/15 10:18 AM, Clara Kühn wrote: > then I get the error ERROR: cannot find > scr/etsch2/kids/ct/qdec/long.qdec.table.dat > > I had tried that. Sorry, no luck with that. > > ----- Ursprüngliche Mail ----- > Von: "Douglas Greve" <gr...@nmr.mgh.harvard.edu> > An: freesurfer@nmr.mgh.harvard.edu > Gesendet: Montag, 3. August 2015 16:16:58 > Betreff: Re: [Freesurfer] cannot find qdec file > > you have to give it the entire path to the file > > On 8/3/15 10:14 AM, Clara Kühn wrote: >> Dear FS-experts, >> >> I want to analyze my longitudinal data with your suggested LME models and am >> therefore following the walkthrough by J. Bernal. I get an error though very >> early on when using the command >> mris_preproc --qdec-long qdec/long.qdec.table.dat --target >> 7kids_template_sc1 --hemi lh --meas thickness --out qdec/lh.thickness.mgh >> >> It always says >> ERROR: cannot find qdec/long.qdec.table.dat >> >> Yes, the walkthrough asks for an input file named just qdec.table.dat, but I >> haven't got that. So far in the longitudinal stream there are >> long.qdec.table.dat and cross.qdec.table.dat files but no simple >> qdec.table.dat files. So I figured I'd use the long.qdec file because FS >> needs to get the information about the long timepoints. >> But it cannot find the file, even though I see it. I've also tried copying >> the long.qdec file and naming it qdec.table.dat but it still doesn't find it. >> >> The entire path to the file is scr/etsch2/kids/ct/qdec/long.qdec.table.dat >> and my SUBJECTS_DIR is scr/etsch2/kids/ct >> >> Can you help me see what I'm missing? >> Thanks a lot in advance, >> Clara >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
