Hi Fidel How do you know it is wrong? Have you looked at the minc and the nifti in freeview? Cheers Bruce
> On Aug 15, 2015, at 10:19 PM, Schumman Resonance <schumm...@gmail.com> wrote: > > Hi freesurfers, > > I want to convert minc files to nii to work with them in ITK-SNAP > segmentation software. > > I have used mri_convert binary, but the orientation on the nii images is > completely wonky. Any advice in terms of how to use the --in_orientation > <argument> --out_orientation <argument> flags? Reading the documentation on > the FS wiki emphasizes how important is to get this right. > > Any pointers will be much appreciate it. > > Thanks, > > Fidel > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
