I'm preparing to migrate over to the new Ubuntu when it comes out.
I'm having the following issues compiling it:
The included VXL library doesnt compile, using the system version seems to fix
this:
/usr/pubsw/packages/vxl/current/include/vxl/core/vnl/algo/vnl_symmetric_eigensystem.h:82:1:
warning: keyword 'export' not implemented, and will be ignored
export template <class T>
The inline functions MRIgetVoxVal ... should be defined in the .h file, they
are not, I have to comment out the inline versions
../include/mri.h:313:15: warning: inline function 'MRIgetVoxVal' declared but
never defined
inline float MRIgetVoxVal(const MRI *mri, int c, int r, int s, int f);
The included ITK library doesnt have the cxx11 ABI
../utils/libutils.a(mriio_nrrd_itk.o): In function
`itk::MemoryAllocationError::MemoryAllocationError(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&, unsigned int,
std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >
const&, std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> > const&)':
/usr/pubsw/packages/itk/current/include/InsightToolkit/Common/itkExceptionObject.h:174:
undefined reference to
`itk::ExceptionObject::ExceptionObject(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&, unsigned int,
std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >
const&, std::__cxx11::basic_string<char, std::char_traits<char>,
std::allocator<char> > const&)'
../utils/libutils.a(mriio_nrrd_itk.o):(.rodata._ZTVN3itk24ImageFileReaderExceptionE[_ZTVN3itk24ImageFileReaderExceptionE]+0x40):
undefined reference to
`itk::ExceptionObject::SetLocation(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&)'
../utils/libutils.a(mriio_nrrd_itk.o):(.rodata._ZTVN3itk24ImageFileReaderExceptionE[_ZTVN3itk24ImageFileReaderExceptionE]+0x48):
undefined reference to
`itk::ExceptionObject::SetDescription(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&)'
../utils/libutils.a(mriio_nrrd_itk.o):(.rodata._ZTVN3itk21MemoryAllocationErrorE[_ZTVN3itk21MemoryAllocationErrorE]+0x40):
undefined reference to
`itk::ExceptionObject::SetLocation(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&)'
../utils/libutils.a(mriio_nrrd_itk.o):(.rodata._ZTVN3itk21MemoryAllocationErrorE[_ZTVN3itk21MemoryAllocationErrorE]+0x48):
undefined reference to
`itk::ExceptionObject::SetDescription(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&)'
../utils/libutils.a(mriio_nrrd_itk.o): In function
`itk::ImageFileReader<itk::Image<itk::DiffusionTensor3D<float>, 3u>,
itk::DefaultConvertPixelTraits<itk::DiffusionTensor3D<float> >
>::GenerateOutputInformation()':
/usr/pubsw/packages/itk/current/include/InsightToolkit/IO/itkImageFileReader.txx:136:
undefined reference to
`itk::ObjectFactoryBase::CreateAllInstance[abi:cxx11](char const*)'
../utils/libutils.a(mriio_nrrd_itk.o): In function
`itk::ImageFileReader<itk::Image<itk::DiffusionTensor3D<float>, 3u>,
itk::DefaultConvertPixelTraits<itk::DiffusionTensor3D<float> >
>::DoConvertBuffer(void*, unsigned long)':
/usr/pubsw/packages/itk/current/include/InsightToolkit/IO/itkImageFileReader.txx:545:
undefined reference to
`itk::ImageIOBase::GetComponentTypeAsString[abi:cxx11](itk::ImageIOBase::IOComponentType)
const'
../utils/libutils.a(numerics.o):(.rodata._ZTV8fs_lbfgs[_ZTV8fs_lbfgs]+0x28):
undefined reference to `vnl_nonlinear_minimizer::is_a[abi:cxx11]() const'
../utils/libutils.a(numerics.o):(.rodata._ZTV8fs_lbfgs[_ZTV8fs_lbfgs]+0x30):
undefined reference to
`vnl_nonlinear_minimizer::is_class(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&) const'
../utils/libutils.a(numerics.o):(.rodata._ZTV9fs_powell[_ZTV9fs_powell]+0x28):
undefined reference to `vnl_nonlinear_minimizer::is_a[abi:cxx11]() const'
../utils/libutils.a(numerics.o):(.rodata._ZTV9fs_powell[_ZTV9fs_powell]+0x30):
undefined reference to
`vnl_nonlinear_minimizer::is_class(std::__cxx11::basic_string<char,
std::char_traits<char>, std::allocator<char> > const&) const'
Dr Chris Adamson
Research Officer, Developmental Imaging, Murdoch Childrens Research Institute
Murdoch Childrens Research Institute
Royal Children's Hospital
Flemington Road, Parkville, Victoria 3052, Australia
www.mcri.edu.au<http://www.mcri.edu.au/>
E chris.adam...@mcri.edu.au
T 03 9936 6780
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