Hi James
what kind of segmentation? If gray/white you could replace the wm.mgz and
go from there, otherwise you would replace the aseg.mgz. In either case,
make sure you use our conventions (the FreeSurferColorLUT.txt for the
aseg, or set every wm voxel to the brain.mgz intensity if it is in the
white matter, and zero otherwise)
cheers
Bruce
On Thu, 3 Dec 2015, james pardon wrote:
Dear All,
I was wondering whether there is a simple way to pass T1 segmentations I have
from another software
to Freesurfer, in order to do the remaining recon-all steps?
Thank you in advance,
James
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