Try this version for mac ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_fdr.osx
Use mri_surfcluster (or mri_volcluster) to do the clustering On 12/18/2015 05:11 PM, std...@virgilio.it wrote: > I have run > mri_fdr --help > but I obtained this warning: > /Applications/freesurfer/bin/mri_fdr: Permission denied. > > I would also ask you if is possible to threshold the FDR map (p<0. > 05), > eliminating clusters < 5 voxels. > > Thanks > > > Stefano > > > >>> ----Messaggio originale---- >>> Da: gr...@nmr.mgh.harvard.edu >>> Data: 11-dic-2015 20.23 >>> A: <freesurfer@nmr.mgh.harvard.edu> >>> Ogg: Re: [Freesurfer] R: Re: FDR in FS-FAST >>> >>> $FREESURFER_HOME/bin >>> >>> On 12/11/15 2:08 PM, std...@virgilio.it wrote: >>>> Thanks, in which folder I should put this file? >>>> >>>> Stefano >>>> >>>> >>>>> ----Messaggio originale---- >>>>> Da: gr...@nmr.mgh.harvard.edu >>>>> Data: 7-dic-2015 19.23 >>>>> A: <freesurfer@nmr.mgh.harvard.edu> >>>>> Ogg: Re: [Freesurfer] FDR in FS-FAST >>>>> >>>>> >>>>> >>>>> On 12/07/2015 08:35 AM, std...@virgilio.it wrote: >>>>>> Hi list, >>>>>> I have two concerns, please: >>>>>> 1) It is possible to apply FDR correction on rs-fMRI seed based >>>>>> analysis by FS-FAST? If yes, I can I do it? >>>>> try this binary >>>>> ftp://surfer.nmr.mgh.harvard. >> edu/transfer/outgoing/flat/greve/mri_fdr >>>>>> 2) I have apply the FS guidelines and I have used Montecarlo >>>>>> correction with threshold at 1.3 but in the within group > analysis >>>> the >>>>>> clusters are very large. In the guide I read examples with a >>>> threshold >>>>>> at 3. Is there a specific reason? >>>>> There is not a hard-and-fast criteria for the voxel-wise >> threshold. 3 >>>> is >>>>> fine as is 1.3 >>>>>> Thanks >>>>>> >>>>>> Stefano >>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> -- >>>>> Douglas N. Greve, Ph.D. >>>>> MGH-NMR Center >>>>> gr...@nmr.mgh.harvard.edu >>>>> Phone Number: 617-724-2358 >>>>> Fax: 617-726-7422 >>>>> >>>>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >>>>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 >>>>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html >>>>> Outgoing: ftp://surfer.nmr.mgh.harvard. >>>> edu/transfer/outgoing/flat/greve/ >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>>> >>>>> The information in this e-mail is intended only for the person to >>>> whom it is >>>>> addressed. If you believe this e-mail was sent to you in error > and >>>> the e-mail >>>>> contains patient information, please contact the Partners >> Compliance >>>> HelpLine at >>>>> http://www.partners.org/complianceline . If the e-mail was sent > to >>>> you in error >>>>> but does not contain patient information, please contact the >> sender >>>> and properly >>>>> dispose of the e-mail. >>>>> >>>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
