Re: [Freesurfer] transform statistical map in MNI to surface

[John Anderson]

Thanks Bruce,

 if my statistical map "stat1.nii.gz"  is in MNI152 standard space what are the command lines that I need ( or if possible any link to wiki)

Thanks a lot!

 

 

John 

Sent: Friday, January 08, 2016 at 2:49 PM
From: "Bruce Fischl" <fis...@nmr.mgh.harvard.edu>
To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] transform statistical map in MNI to surface

you wouldn't run it on the stats map - you would run it on the
T1-weighted MNI152 volume

On Fri, 8 Jan 2016, John Anderson wrote:

> Thanks you Doug,
> Kindly how can I run recon-all on the statistical map ? my statistical map
> is an output of TBSS analysis
>  
> Bests,
> John 
>   Sent: Friday, January 08, 2016 at 1:41 PM
> From: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu>
> To: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] transform statistical map in MNI to surface
> If it is in mni152 space, then you can run recon-all on the mni152 T1
> map, then use mri_vol2surf with --regheader to map the volume tothe
> surface, then use tksurfer or freeview to view the resulting map
>
> On 01/08/2016 12:49 PM, John Anderson wrote:
> > Hi Experts,
> > I have statistical map in MNI space and I want to view it using
> > tksurfer how can i transform this map to a surface ?
> >
> > Bests,
> > John
> >
> >
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> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
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The information in this e-mail is intended only for the person to whom it is
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