Although it should be mentioned that outputs (even of subfields) are going to change due to differences in the regular freesurfer processing, as the subfields stream builds upon the regular FS stream.
Best, Martin On 03/16/2016 10:52 AM, Eugenio Iglesias wrote: > I only changed some details (e.g., temporary directories) that do not affect > the output. > > > Juan Eugenio Iglesias > Postdoctoral researcher BCBL > www.jeiglesias.com > www.bcbl.eu > > Legal disclaimer/Aviso legal/Lege-oharra: www.bcbl.eu/legal-disclaimer > > ----- Original Message ----- > From: "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> > To: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> > Sent: Wednesday, March 16, 2016 3:49:31 PM > Subject: Re: [Freesurfer] FreeSurfer 6.0 > > yes, although the hippocampal stuff hasn't changed I don't think > (Eugenio: is that correct)? > > On Wed, 16 Mar 2016, Alan Francis wrote: > >> Bruce, with Eugenio's guidance, I downloaded 6.0 beta a few months ago and >> ran the HSF method successfully. Have they retracted that version? >> >> best, >> >> Alan >> >> On Wed, Mar 16, 2016 at 9:57 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> >> wrote: >> actually there is no beta yet, but hopefully within a week or so >> On Wed, 16 Mar 2016, Alan Francis wrote: >> >> Hi Elizabeth: >> >> I ran the Hippocampal subfields on 6.0 beta. The >> parcellation looks great. >> Beta is available for download. Here is the URL: >> >> https://surfer.nmr.mgh.harvard.edu/fswiki/Download >> >> best, >> >> Alan >> >> On Wed, Mar 16, 2016 at 6:23 AM, Elisabeth Paul >> <elisabeth.p...@student.uva.nl> wrote: >> Dear ladies and gentlemen, >> >> for a research project I need to measure the volume >> of the different >> hippocampus subregions. I want to use FreeSurfer 6.0 >> for that but I >> can only find FreeSurfer 5.3 online. Is FreeSurfer >> 6.0 not yet >> released and if so, when will it be released? If it >> is already >> released, could you tell me where to find it? >> >> Thank you very much in advance. >> >> Kind regards, >> >> Elisabeth Paul >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for >> the person to whom >> it is >> addressed. If you believe this e-mail was sent to >> you in error and the >> e-mail >> contains patient information, please contact the >> Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the >> e-mail was sent to you >> in error >> but does not contain patient information, please >> contact the sender >> and properly >> dispose of the e-mail. >> >> >> >> >> -- >> |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~| >> >> Alan N. Francis PhD >> NIDA T32 Fellow in Computational Neuroscience >> Brain Imaging Center >> McLean Hospital >> Harvard Medical School >> 115 Mill Street, Belmont, MA 02478 >> al...@bwh.harvard.edu >> afran...@mclean.harvard.edu >> >> >> >> |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~| >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom >> it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >> >> >> -- >> |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~| >> >> Alan N. Francis PhD >> NIDA T32 Fellow in Computational Neuroscience >> Brain Imaging Center >> McLean Hospital >> Harvard Medical School >> 115 Mill Street, Belmont, MA 02478 >> al...@bwh.harvard.edu >> afran...@mclean.harvard.edu >> >> >> |~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~|~| >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- Martin Reuter, PhD Assistant Professor of Radiology, Harvard Medical School Assistant Professor of Neurology, Harvard Medical School A.A.Martinos Center for Biomedical Imaging Massachusetts General Hospital Research Affiliate, CSAIL, MIT Phone: +1-617-724-5652 Web : http://reuter.mit.edu _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
