On 3/16/16 6:52 AM, Caroline Beelen wrote:
Hi FS team,
Sorry for these rather basic questions…
I'm not sure whether the gnumeric file is an ascii file (see mails
below). Attached you'll find the file. It seems the case when you open
it in the terminal screen that the nr's look fine (with command cat).
However as soon as you type the command gnumeric and so on, it creates
a wrong table from the start (see file attached). Can I somehow change
this?
How did you create this file? The aparcstats2table command produces a
simple ascii file.
I have an additional question:
I was looking at the Qdec info (tutorial) and I am not totally sure
how to create the table.dat file… Where to get the volume measures
from, if you’d like to include those? The statistical folder (where
the tables are from)?
Run asegstats2table and/or aparcstats2table to create a table of the
volumes, then extract the values you need. BTW, you don't have to have
volume measures in the qdec table.
Thank you for responding in advance.
Kind regards, Caroline
-----Oorspronkelijk bericht-----
Van: freesurfer-boun...@nmr.mgh.harvard.edu
<mailto:freesurfer-boun...@nmr.mgh.harvard.edu>[mailto:freesurfer-boun...@nmr.mgh.harvard.edu]
Namens Douglas N Greve
Verzonden: dinsdag 8 maart 2016 0:24
Aan: freesurfer@nmr.mgh.harvard.edu
<mailto:freesurfer@nmr.mgh.harvard.edu>
Onderwerp: Re: [Freesurfer] mean thickness
the table file lh.aparc.thickness.table should be an ascii file. when
you look at it with cat/more/less, what do you see? Can you send that
table file?
On 03/07/2016 04:33 AM, Caroline Beelen wrote:
> Hi Bruce,
>
> I'm a beginner in FS, so I just followed tutorial instructions for generating the files
carefully...
> I generated it by typing in for instance (after recon-all process was
> done): aparcstats2table --hemi lh --meas thickness --subjects A01_T1
> A02_T1 etc... A10_T1 --tablefile lh.aparc.thickness.table followed by
> the command: gnumeric lh.aparc.thickness.table
>
> It's a linux pc with Ubuntu 12.04 LTS (processor intel core i7-3770
> CPU @ 3.4GHz x 8)
>
> Attached the log file (A09).
>
> Thank you very much!
>
> Greetings, Caroline
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