Hi Nick, it looks like the base finished without error. But if your *.long.basid/surf/ are missing the lh.thickness , then something went wrong when processing the -long runs. I would recommend to run a single subject step by step to see what goes wrong (could be IO problems or disk space etc).
Best, Martin > On Aug 15, 2016, at 11:06 PM, Corriveau-Lecavalier Nick > <nick.corriveau-lecaval...@umontreal.ca> wrote: > > Hello FreeSurfer developers, > > > I am trying to run the long_mris_slopes command for surfaces. It worked well > the thickness, but when I run it for surfaces, my terminal tells me that the > surface file (lh.surface or rh.surface) is missing. It appears that all my > subjects are missing those files. I've search the list and no similar error > seems to have been reported. > > > This is the exact command I used: long_mris_slopes --qdec > /Applications/freesurfer/subjects/longitudinal_training/long_training.dat > --meas surface --hemi rh --do-avg --do-rate --do-pc1 --do-spc --do-stack > --do-label --time weeks --qcache fsaverage --sd > /Applications/freesurfer/subjects/ > > > I am running a on a OS X El Captain software, and the FreeSurfer version I am > using is the most recent one. I also joined the recon-all.long of one of my > subject (of the base, since I'm running longitudinal data), in case it could > help. > > > Regards, > > > Nick > <recon-all.log>_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
