yup, or mri_Info called form the command line. If you use MRIread on the
aseg.mgz you can extract e.g. the left hippocampus using matlab via:
mri = MRIread('aseg.mgz');
find(mri.vol == 17);
then compute the ras coords of those indices using ind2sub
cheers
Bruce
On Sun, 4 Sep 2016,
Ruyuan Zhang wrote:
Hi, Aziz
You can use MRIread function to read in a volume (i.e. brainmask.mgz).
You will get a structure, which contains a field called ras2vox.
cheers
ruyuan
On 9/4/16 6:23 PM, Aziz Nanthaamornphong wrote:
Hi,
For example, I want to know the list of x, y, z coordinates of a left
hippocampus volume.
As you mentioned "ras2vox" matrices, hoe can I see or get these
matrices?
Thank you.
Aziz
On Monday, 5 September 2016, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
Hi Aziz
can you elaborate? What coordinates do you want? What are
you trying to do with them? The .mgz format contains
ras2vox matrices that let you go from voxel indices to RAS
coordinates and such.
cheers
Bruce
On Sun, 4 Sep 2016, Aziz Nanthaamornphong wrote:
Dear Freesurfer experts,
How can we get the coordinates (X, Y, Z) of a
particular volume? I couldn't
find any functions or command to do that.
Thank you in advance.
Aziz.
--
Aziz Nanthaamornphong, Ph.D.,
Chair of Master of Science Program in Information Technology
Department of ICT
Faculty of Technology and Environment
Prince of Songkla University, Phuket Campus
+66 7627 6716 (v)
http://research.te.psu.ac.th/aziz
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