Is your SUBJETS_DIR set correctly? Probably it should be /home/bmiadmin/Tamara/FreeSurfer_GENFI/analysis/output
ie, there needs to be a "/" at the beginning On 09/07/2016 09:48 AM, Tamara Tavares wrote: > Hello, > > I am trying to extract the volumes from the aseg file of multiple > subjects using the command: > > asegstats2table --subjects C9F03_1 C9F03_2 C9F07_1 --meas volume > --tablefile aseg_stats_test.txt > > I keep getting the following error: > > SUBJECTS_DIR : home/bmiadmin/Tamara/FreeSurfer_GENFI/analysis/output > Parsing the .stats files > ERROR: The stats file > home/bmiadmin/Tamara/FreeSurfer_GENFI/analysis/output/C9F03_1/stats/aseg.stats > > is not found or is too small to be a valid statsfile > Use --skip flag to automatically skip bad stats files > > I have set my subject directory to where all my output files are > located and the subjects/stats folder does contain a aseg.stats file. > I have attached a aseg.stats file. > > Thank you in advance for your help! > Tamara > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
