This is likely due to remote display. Would it be possible for you to run it locally? You can also adjust overlay settings from the command-line, although it is not as convenient as the GUI. Run “freeview -h” and look for surface overlay related options.
> On Nov 21, 2016, at 9:48 AM, Emmanuel Nwosu <emmanuel.c.nw...@gmail.com> > wrote: > > Yes am running it on a remote server. Here is the screen shot > > On Mon, Nov 21, 2016 at 4:40 PM, Ruopeng Wang <rpw...@nmr.mgh.harvard.edu > <mailto:rpw...@nmr.mgh.harvard.edu>> wrote: > Can you post a screenshot? Are you running freeview remotely? > >> On Nov 21, 2016, at 9:32 AM, Emmanuel Nwosu <emmanuel.c.nw...@gmail.com >> <mailto:emmanuel.c.nw...@gmail.com>> wrote: >> >> it opens a blank "configure overlay" dialog, then the screen goes dark >> >> On Mon, Nov 21, 2016 at 4:29 PM, Ruopeng Wang <rpw...@nmr.mgh.harvard.edu >> <mailto:rpw...@nmr.mgh.harvard.edu>> wrote: >> What happens when you click on the button? >> >>> On Nov 21, 2016, at 9:02 AM, Emmanuel Nwosu <emmanuel.c.nw...@gmail.com >>> <mailto:emmanuel.c.nw...@gmail.com>> wrote: >>> >>> Thanks Ruopeng. I can't open the configure overlay button. Is there any >>> other means of changing it? >>> >>> On Mon, Nov 21, 2016 at 3:58 PM, Ruopeng Wang <rpw...@nmr.mgh.harvard.edu >>> <mailto:rpw...@nmr.mgh.harvard.edu>> wrote: >>> You need to adjust the color scale. Click on “Configure Overlay” button to >>> adjust it. >>> >>> Best, >>> Ruopeng >>> >>>> On Nov 21, 2016, at 3:52 AM, Emmanuel Nwosu <emmanuel.c.nw...@gmail.com >>>> <mailto:emmanuel.c.nw...@gmail.com>> wrote: >>>> >>>> Hi >>>> >>>> Am having a bit of a problem that may be easy to resolve. >>>> >>>> I want to view an LGI two-group comparison I did in mri glm-fit with >>>> freeview. Each time I load the overlay (cache.th13.abs.sig.cluster.mg >>>> <http://cache.th13.abs.sig.cluster.mg/>h). The grayscale inflated surface >>>> turns red like what is in picture-1 >>>> >>>> Please have anyone an idea why this is happening and what I can do to >>>> change it back to grayscale like picture 2 >>>> Thanks for your help >>>> >>>> Emmanuel >>>> >>>> <picture-1.jpg><picture-2.jpg>_______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >>> >>> >>> The information in this e-mail is intended only for the person to whom it is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline >>> <http://www.partners.org/complianceline> . If the e-mail was sent to you in >>> error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline >> <http://www.partners.org/complianceline> . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline > <http://www.partners.org/complianceline> . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > <screen shot.png>_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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