just use mri_coreg -- that is the best!
On 03/13/2017 04:27 PM, Christopher Markiewicz wrote: > Hi all, > > bbregister --init-best always produces "ERROR: cannot spec an init > method with --init-best", because InitCoreg is defined as 1 by > default, and never set to 0 by --init-best. (Setting something else > that unsets InitCoreg will trigger the same error.) > > Example, given SUBJ and EPI: > > $ bbregister --init-best --s $SUBJ --mov $EPI --o > ${EPI%.nii.gz}_bbr.nii.gz --reg ${EPI%.nii.gz}_bbr.dat > ERROR: cannot spec an init method with --init-best > > Using FreeSurfer 6.0 release installed on an Ubuntu 16.04 machine. > > Thanks, > Chris > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.