just use mri_coreg -- that is the best!

On 03/13/2017 04:27 PM, Christopher Markiewicz wrote:
> Hi all,
>
> bbregister --init-best always produces "ERROR: cannot spec an init 
> method with --init-best", because InitCoreg is defined as 1 by 
> default, and never set to 0 by --init-best. (Setting something else 
> that unsets InitCoreg will trigger the same error.)
>
> Example, given SUBJ and EPI:
>
> $ bbregister --init-best --s $SUBJ --mov $EPI --o 
> ${EPI%.nii.gz}_bbr.nii.gz --reg ${EPI%.nii.gz}_bbr.dat
> ERROR: cannot spec an init method with --init-best
>
> Using FreeSurfer 6.0 release installed on an Ubuntu 16.04 machine.
>
> Thanks,
> Chris
>
>
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