what is your freeview command? Are you trying to view it on a surface?
On 04/07/2017 12:53 AM, Dilip Puri wrote: > Hi everyone, > > when I used following command: > > mri_binarize --i myfile.img --match 17 --binval -1 --o > your.lefthippo.nii.gz > > then I got output your.lefthippo.nii.gz file when I read this file > using FREEVIEW then it completly different from original mask. > > > > Thanks > > Dilip​ > > > On Thu, Apr 6, 2017 at 11:08 PM, Bruce Fischl > <fis...@nmr.mgh.harvard.edu <mailto:fis...@nmr.mgh.harvard.edu>> wrote: > > Hi Dilip > > yes, freesurfer will do this for you, although the labels will be > 17 for > left hippocampus and 53 for right. > > cheers > Bruce > On Thu, 6 Apr 2017, Dilip Puri wrote: > > > Hi everyone, > > > > I am working on Hippocampus segmentation using Neural Networks > for that I need labeled images of Hippocampus corresponding to > original images. > > > > I am using OASIS Dataset for this. I want to generate labeled > images using FREESURFER. Is there any way to label each 3D co-ordinate > > HippoCampus -1 > > Otherwise - 0 > > > > Here are sample files link > > > > Kindly help me! > > > > > > Dilip Puri > > IIIT Vadodara > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > The information in this e-mail is intended only for the person to > whom it is > addressed. If you believe this e-mail was sent to you in error and > the e-mail > contains patient information, please contact the Partners > Compliance HelpLine at > http://www.partners.org/complianceline > <http://www.partners.org/complianceline> . If the e-mail was sent > to you in error > but does not contain patient information, please contact the > sender and properly > dispose of the e-mail. > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
