Thank very much Doug. Also, I was looking into the annotval2surfoverlay file and I have couple of questions. % Run these commands in matlab % annotnames = strvcat('superiortemporal','insula','postcentral'); % annotvals = [1.1 2.2 3.7]; % annotfile = '~/paul_analysis/fsaverage/label/lh.aparc.annot'; % surfoverlay = annotval2surfoverlay(annotvals,annotnames,annotfile); % clear mri % mri.vol = surfoverlay; % MRIwrite(mri,'vals.mgh'); % 1) Correct me if I am wrong, the annotation values (annotvals) are from results after correcting for multiple comparisons using mri_fdr? 2) Is this correct way to add octave path to freesurfer's path?
setenv FS_USE_OCTAVE 4.0.3 setenv FS_OCTAVE_LIB /Applications/octave/lib setenv FS_OCTAVE_BIN /Application/octave/binary Thanks, Best, Paul On Thu, Apr 20, 2017 at 10:55 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu > wrote: > you can get it here > > https://gate.nmr.mgh.harvard.edu/safelinks/greve/annotval2surfoverlay.m > > On 04/20/2017 10:10 AM, miracle ozzoude wrote: > > Hello Doug, > > I downloaded and installed octave. However, I can't find the > > annotval2surfoverlay.m file in the matlab directory of freesurfer. > > Does it come with FS v6 or do i need to download the file? Also, I was > > looking into the annotval2surfoverlay file and I have couple of > > questions. > > % Run these commands in matlab > > % annotnames = strvcat('superiortemporal','insula','postcentral'); > > % annotvals = [1.1 2.2 3.7]; > > % annotfile = '~/subjects/fsaverage/label/lh.aparc.annot'; > > % surfoverlay = annotval2surfoverlay(annotvals,annotnames,annotfile); > > % clear mri > > % mri.vol = surfoverlay; > > % MRIwrite(mri,'vals.mgh'); > > % > > 1) Are the annotation values (annotvals) from results after correcting > > for multiple comparisons using mri_fdr? > > 2) Do I need to add octave path to freesurfer PATH like the example > > below? > > setenv FS_USE_OCTAVE 4.0.3 > > > > setenv FS_OCTAVE_LIB /Applications/octave/lib > > setenv FS_OCTAVE_BIN /Application/octave/binary > > > > On Wed, Apr 19, 2017 at 3:39 PM, Douglas N Greve > > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > > > I think that will work > > > > > > On 04/19/2017 03:33 PM, miracle ozzoude wrote: > > > Hello Doug, > > > Do you think writing the script with octave can substitute for > > matlab? > > > I am using FS v6.0 and I have the annotval2surfoverlay.m. Thanks > > > Best, > > > Paul > > > > > > On Wed, Apr 19, 2017 at 1:47 PM, Douglas N Greve > > > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > > <mailto:gr...@nmr.mgh.harvard.edu > > <mailto:gr...@nmr.mgh.harvard.edu>>> wrote: > > > > > > Sorry, I don't have another solution for you. > > > > > > > > > On 04/19/2017 01:42 PM, miracle ozzoude wrote: > > > > Thanks Doug. However, I am running freesurfer analysis on my > > > personal > > > > computer and I don't have matlab. Also, I don't know how > > this matlab > > > > script works/ matlab works. Any instructions on how to use > > it or > > > > alternate? Please and thank you. > > > > Best, > > > > Paul. > > > > > > > > On Wed, Apr 19, 2017 at 1:33 PM, Douglas N Greve > > > > <gr...@nmr.mgh.harvard.edu > > <mailto:gr...@nmr.mgh.harvard.edu> > > <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu > >> > > > <mailto:gr...@nmr.mgh.harvard.edu > > <mailto:gr...@nmr.mgh.harvard.edu> > > > <mailto:gr...@nmr.mgh.harvard.edu > > <mailto:gr...@nmr.mgh.harvard.edu>>>> wrote: > > > > > > > > It is a table of data, so you can't visualize it > > directly on > > > anything. > > > > You can try using annotval2surfoverlay.m to create a > > surface > > > > overlay of > > > > the data. > > > > > > > > > > > > On 04/19/2017 10:05 AM, miracle ozzoude wrote: > > > > > Hello Doug, > > > > > It worked. The issue was due to formatting error > > with the > > > aparc > > > > file. > > > > > Also, I was trying to visualize the result on the > > surface > > > using > > > > > freeview -f fsaverage/lh.pial -viewport 3d (clicking > > > overlay on > > > > > freeview and loading the sig.mgh). However, i got an > > error " > > > > failed to > > > > > display overlay". How can I visualize the result? > Thanks > > > > > Best, > > > > > Paul > > > > > > > > > > On Tue, Apr 18, 2017 at 10:03 PM, Douglas Greve > > > > > <gr...@nmr.mgh.harvard.edu > > <mailto:gr...@nmr.mgh.harvard.edu> > > > <mailto:gr...@nmr.mgh.harvard.edu > > <mailto:gr...@nmr.mgh.harvard.edu>> > > > <mailto:gr...@nmr.mgh.harvard.edu > > <mailto:gr...@nmr.mgh.harvard.edu> > > <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu > >>> > > > > <mailto:gr...@nmr.mgh.harvard.edu > > <mailto:gr...@nmr.mgh.harvard.edu> > > > <mailto:gr...@nmr.mgh.harvard.edu > > <mailto:gr...@nmr.mgh.harvard.edu>> > > > > <mailto:gr...@nmr.mgh.harvard.edu > > <mailto:gr...@nmr.mgh.harvard.edu> > > <mailto:gr...@nmr.mgh.harvard.edu > > <mailto:gr...@nmr.mgh.harvard.edu>>>>> wrote: > > > > > > > > > > You have a table of data, so no template is > > needed. If you > > > > put the > > > > > --surf before the --table, it probably runs, but it > > > will ignore > > > > > the surface > > > > > > > > > > > > > > > On 4/18/17 9:58 PM, miracoo...@gmail.com > > <mailto:miracoo...@gmail.com> > > > <mailto:miracoo...@gmail.com <mailto:miracoo...@gmail.com>> > > > > <mailto:miracoo...@gmail.com > > <mailto:miracoo...@gmail.com> <mailto:miracoo...@gmail.com > > <mailto:miracoo...@gmail.com>>> > > > > > <mailto:miracoo...@gmail.com > > <mailto:miracoo...@gmail.com> <mailto:miracoo...@gmail.com > > <mailto:miracoo...@gmail.com>> > > > <mailto:miracoo...@gmail.com <mailto:miracoo...@gmail.com> > > <mailto:miracoo...@gmail.com <mailto:miracoo...@gmail.com>>>> wrote: > > > > >> Thanks doug. Does it mean when using the --table > > > flag, you > > > > can't > > > > >> use the fsaverage template? I came across several > > > post in the > > > > >> forum that used "--surf fsaverage lh " and it > > worked. > > > > >> Best, > > > > >> Paul > > > > >> > > > > >> Sent from my BlackBerry 10 smartphone. > > > > >> *From: *Douglas Greve > > > > >> *Sent: *Tuesday, April 18, 2017 9:52 PM > > > > >> *To: *freesurfer@nmr.mgh.harvard.edu > > <mailto:freesurfer@nmr.mgh.harvard.edu> > > > <mailto:freesurfer@nmr.mgh.harvard.edu > > <mailto:freesurfer@nmr.mgh.harvard.edu>> > > > > <mailto:freesurfer@nmr.mgh.harvard.edu > > <mailto:freesurfer@nmr.mgh.harvard.edu> > > > <mailto:freesurfer@nmr.mgh.harvard.edu > > <mailto:freesurfer@nmr.mgh.harvard.edu>>> > > > > >> <mailto:freesurfer@nmr.mgh.harvard.edu > > <mailto:freesurfer@nmr.mgh.harvard.edu> > > > <mailto:freesurfer@nmr.mgh.harvard.edu > > <mailto:freesurfer@nmr.mgh.harvard.edu>> > > > > <mailto:freesurfer@nmr.mgh.harvard.edu > > <mailto:freesurfer@nmr.mgh.harvard.edu> > > > <mailto:freesurfer@nmr.mgh.harvard.edu > > <mailto:freesurfer@nmr.mgh.harvard.edu>>>> > > > > >> *Reply To: *Freesurfer support list > > > > >> *Subject: *Re: [Freesurfer] mri_glmfit error > > with aparc > > > > table flag > > > > >> > > > > >> > > > > >> Don't include --surf fsaverage lh. It thinks the > > > input is a > > > > >> surface, not a table > > > > >> > > > > >> > > > > >> > > > > >> On 4/18/17 9:21 PM, miracle ozzoude wrote: > > > > >>> Hello freesurfer, > > > > >>> I am trying to run mri_glmfit with the --table > > flag. My > > > > >>> aparc_lh_thick_stats.txt contain entorhinal and > > > > parahippocampal > > > > >>> thickness values for 32 subjects. I ran the glm > > > command and > > > > >>> received an error. Please, how can i solve this > > > issue? I have > > > > >>> included my command, fsgd file, contrast > > matrix and > > > error > > > > below. > > > > >>> Thanks > > > > >>> Best, > > > > >>> Paul > > > > >>> > > > > >>> GLM command: mri_glmfit --table > > aparc_lh_thick_stats.txt > > > > --fsgd > > > > >>> age.fsgd --C age1.mtx --C age2.mtx --surf > > fsaverage lh > > > > --cortex > > > > >>> --glmdir lh.thickness.glmdir > > > > >>> > > > > >>> > > > > >>> ERROR= "gdfRead(): reading age.fsgd > > > > >>> > > > > >>> INFO: DeMeanFlag keyword not found, DeMeaning > will > > > NOT be > > > > done. > > > > >>> > > > > >>> Continuous Variable Means (all subjects) > > > > >>> > > > > >>> 0 Age 39.9375 17.3312 > > > > >>> > > > > >>> Class Means of each Continuous Variable > > > > >>> > > > > >>> 1 Group1 35.6316 > > > > >>> > > > > >>> 2 Group2 46.2308 > > > > >>> > > > > >>> INFO: gd2mtx_method is dods > > > > >>> > > > > >>> Reading source surface > > > > >>> > > > > > > > > > /Users/MiracleOz/Documents/improvervsdeclinermri/ > fsaverage/surf/lh.white > > > > >>> > > > > >>> Number of vertices 163842 > > > > >>> > > > > >>> Number of faces 327680 > > > > >>> > > > > >>> Total area 65416.984375 > > > > >>> > > > > >>> AvgVtxArea 0.399269 > > > > >>> > > > > >>> AvgVtxDist 0.721953 > > > > >>> > > > > >>> StdVtxDist 0.195470 > > > > >>> > > > > >>> > > > > >>> $Id: mri_glmfit.c,v 1.241.2.4 2016/12/08 22:02:40 > > > zkaufman > > > > Exp $ > > > > >>> > > > > >>> cwd > > /Users/MiracleOz/Documents/improvervsdeclinermri > > > > >>> > > > > >>> cmdline mri_glmfit.bin --table > > > aparc_lh_thick_stats.txt --fsgd > > > > >>> age.fsgd --C age1.mtx --C age2.mtx --surf > > fsaverage lh > > > > --cortex > > > > >>> --glmdir lh.thickness.glmdir > > > > >>> > > > > >>> sysname Darwin > > > > >>> > > > > >>> hostname MacBook-Pro.local > > > > >>> > > > > >>> machine x86_64 > > > > >>> > > > > >>> user MiracleOz > > > > >>> > > > > >>> FixVertexAreaFlag = 1 > > > > >>> > > > > >>> UseMaskWithSmoothing 1 > > > > >>> > > > > >>> OneSampleGroupMean 0 > > > > >>> > > > > >>> y > > > > >>> > > > > > > > > > /Users/MiracleOz/Documents/improvervsdeclinermri/aparc_ > lh_thick_stats.txt > > > > >>> > > > > >>> logyflag 0 > > > > >>> > > > > >>> usedti 0 > > > > >>> > > > > >>> FSGD age.fsgd > > > > >>> > > > > >>> labelmask > > > > >>> > > > > > > > > > /Users/MiracleOz/Documents/improvervsdeclinermri/ > fsaverage/label/lh.cortex.label > > > > >>> > > > > >>> maskinv 0 > > > > >>> > > > > >>> glmdir lh.thickness.glmdir > > > > >>> > > > > >>> IllCondOK 0 > > > > >>> > > > > >>> ReScaleX 1 > > > > >>> > > > > >>> DoFFx 0 > > > > >>> > > > > >>> Creating output directory lh.thickness.glmdir > > > > >>> > > > > >>> Loading y from > > > > >>> > > > > > > > > > /Users/MiracleOz/Documents/improvervsdeclinermri/aparc_ > lh_thick_stats.txt > > > > >>> > > > > >>> Found 66 data colums > > > > >>> > > > > >>> Found 0 data rows > > > > >>> > > > > >>> INFO: gd2mtx_method is dods > > > > >>> > > > > >>> Saving design matrix to > lh.thickness.glmdir/Xg.dat > > > > >>> > > > > >>> Computing normalized matrix > > > > >>> > > > > >>> Normalized matrix condition is 32.2165 > > > > >>> > > > > >>> Matrix condition is 20734.7 > > > > >>> > > > > >>> Found 149955 points in label. > > > > >>> > > > > >>> ERROR: mri_reshape: number of elements cannot > > change > > > > >>> > > > > >>> nv1 = 163842, nv1 = 66 > > > > >>> > > > > >>> search space = 82219.962936 > > > > >>> > > > > >>> ERROR: dimension mismatch between y and X. > > > > >>> > > > > >>> y has 0 inputs, X has 32 rows." > > > > >>> > > > > >>> FSGD file: GroupDescriptorFile 1 > > > > >>> > > > > >>> Title MOT > > > > >>> > > > > >>> Class Group1 > > > > >>> > > > > >>> Class Group2 > > > > >>> > > > > >>> Variables Age > > > > >>> > > > > >>> Input 01053p Group1 23 > > > > >>> > > > > >>> Input 01054p Group1 43 > > > > >>> > > > > >>> Input 01061p Group2 39 > > > > >>> > > > > >>> Input 01062p Group2 19 > > > > >>> > > > > >>> Input 01074p Group2 28 > > > > >>> > > > > >>> .............. (I have more participants) > > > > >>> > > > > >>> > > > > >>> CONTRAST MATRIX: 1 -1 0 0 > > > > >>> > > > > >>> > > > > >>> > > > > >>> _______________________________________________ > > > > >>> Freesurfer mailing list > > > > >>> Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > > > <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu>>> > > > > >>> <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > > > <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu>>>> > > > > >>> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>> > > > > > > > > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>> > > > > >>> > > > > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>> > > > > > > > > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>> > > > > >> > > > > >> _______________________________________________ > > > > >> Freesurfer mailing list > > > > >> Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > > > <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu>>> > > > > >> <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > > > <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu>>>> > > > > >> > > > 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<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>>> > The > > > > > information in this e-mail is intended only for > > the person > > > > to whom > > > > > it is addressed. If you believe this e-mail was > sent > > > to you in > > > > > error and the e-mail contains patient > > information, please > > > > contact > > > > > the Partners Compliance HelpLine at > > > > > http://www.partners.org/complianceline > > <http://www.partners.org/complianceline> > > > <http://www.partners.org/complianceline > > <http://www.partners.org/complianceline>> > > > > <http://www.partners.org/complianceline > > <http://www.partners.org/complianceline> > > > <http://www.partners.org/complianceline > > <http://www.partners.org/complianceline>>> > > > > > <http://www.partners.org/complianceline > > <http://www.partners.org/complianceline> > > > <http://www.partners.org/complianceline > > <http://www.partners.org/complianceline>> > > > > <http://www.partners.org/complianceline > > <http://www.partners.org/complianceline> > > > <http://www.partners.org/complianceline > > <http://www.partners.org/complianceline>>>> . If the e-mail was sent > > > > > to you in error but does not contain patient > > > information, please > > > > > contact the sender and properly dispose of the > > e-mail. > > > > > > > > > > _______________________________________________ > > > > > Freesurfer mailing list > > > > > Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > > > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto: > Freesurfer@nmr.mgh.harvard.edu> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu>>> > > > > > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>> > > > > > > > > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>> > > > > -- > > > > Douglas N. Greve, Ph.D. > > > > MGH-NMR Center > > > > gr...@nmr.mgh.harvard.edu > > <mailto:gr...@nmr.mgh.harvard.edu> > > <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu > >> > > > <mailto:gr...@nmr.mgh.harvard.edu > > <mailto:gr...@nmr.mgh.harvard.edu> > > <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu > >>> > > > > Phone Number:617-724-2358 <tel:617-724-2358> <tel: > 617-724-2358 <tel:617-724-2358>> > > > <tel:617-724-2358 <tel:617-724-2358> <tel:617-724-2358 > > <tel:617-724-2358>>> > > > > Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422 > > <tel:617-726-7422>> <tel:617-726-7422 <tel:617-726-7422> > > > <tel:617-726-7422 <tel:617-726-7422>>> > > > > > > > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>> > > > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>>> > > > > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > > <https://gate.nmr.mgh.harvard.edu/filedrop2> > > > <https://gate.nmr.mgh.harvard.edu/filedrop2 > > <https://gate.nmr.mgh.harvard.edu/filedrop2>> > > > > <https://gate.nmr.mgh.harvard.edu/filedrop2 > > <https://gate.nmr.mgh.harvard.edu/filedrop2> > > > <https://gate.nmr.mgh.harvard.edu/filedrop2 > > <https://gate.nmr.mgh.harvard.edu/filedrop2>>> > > > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> > > > > > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>>> > > > > Outgoing: > > > > > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> > > > > > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>> > > > > > > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> > > > > > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>>> > > > > _______________________________________________ > > > > Freesurfer mailing list > > > > Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu <mailto: > Freesurfer@nmr.mgh.harvard.edu> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu>>> > > > > > >https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>> > > > > > > > > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>>> > > > > > > > > > > > > > > > > > > > > _______________________________________________ > > > > Freesurfer mailing list > > > > Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > > > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>> > > > > > > -- > > > Douglas N. Greve, Ph.D. > > > MGH-NMR Center > > > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > > <mailto:gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu > >> > > > Phone Number: 617-724-2358 <tel:617-724-2358> > > <tel:617-724-2358 <tel:617-724-2358>> > > > Fax: 617-726-7422 <tel:617-726-7422> <tel:617-726-7422 > > <tel:617-726-7422>> > > > > > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>> > > > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > > <https://gate.nmr.mgh.harvard.edu/filedrop2> > > > <https://gate.nmr.mgh.harvard.edu/filedrop2 > > <https://gate.nmr.mgh.harvard.edu/filedrop2>> > > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>> > > > Outgoing: > > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> > > > > > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/>> > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > <mailto:Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu>> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer>> > > > > > > > > > > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > > -- > > Douglas N. Greve, Ph.D. > > MGH-NMR Center > > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > > Phone Number: 617-724-2358 > > Fax: 617-726-7422 > > > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > > <https://gate.nmr.mgh.harvard.edu/filedrop2> > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > Outgoing: > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <mailto:freesur...@nmr.mgh. > harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.