Dear Freesurfer list, We have been using Freeview's "transform volume" functionality to do AC-PC alignment on some of our T1 scans before processing with recon-all. We had previously been using SPM, but wanted to move to an entirely free method rather than relying on MATLAB. It turns out that, for some scans where a lot of translation is needed to move the subject into AC-PC alignment, the volume will get cut off after performing the transform. This is in Freeview v.1.0 running on Mac OS 10.10.5. When I tried running the same thing in the new version of Freeview (v.2.0), loading the T1 image crashes freeview, which I believe to be a separate issue. Is there any way to do the AC-PC alignment in freeview or freesurfer without having issues with the field of view being cut?
Thanks, Liberty — Liberty Hamilton Postdoctoral Fellow, Laboratory of Dr. Edward Chang Center for Integrative Neuroscience, University of California San Francisco _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
