This is a known issue. The patch for the mri_segstats binary can be found here:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0-patch/mri_segstats.centos6_x86_64 Please overwrite your existing mri_segstats binary with the one from the link above. On 06/26/2017 02:26 PM, Shuo Zhou wrote: > Hello FreeSurfer Developers, > > I am using recon-all to process the structural mri data. The autorecon1 > works fine, however I got the following error when I run the recon-all > autorecon2 command: > > mghRead(/home/acp16sz/openfmri/data/subdir/ds003_sub001/mri/ribbon.mgz, > -1): could not open file. > > I have checked the output of the recon-all steps > (https://surfer.nmr.mgh.harvard.edu/fswiki/ReconAllDevTable), the file > ribbon.mgz is the output of autorecon3, why it is required in > autorecon2. Also, Ive attached the recon-all.log in case it's of any use. > > 1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0 > > 2) Platform: 64-bit Scientific Linux (which is Redhat based) HPC > > 3) uname -a: Linux iceberg-login2 2.6.32-696.3.2.el6.x86_64 #1 SMP Mon > Jun 19 11:23:31 CDT 2017 x86_64 x86_64 x86_64 GNU/Linux > > 4) recon-all.log: see attached > > Kind regards, > > Shuo > > Sent from Mail <https://go.microsoft.com/fwlink/?LinkId=550986> for > Windows 10 > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
