You can create individual labels with mri_annotation2label from the
fsaverage annotation. The label is a text file with coordinate in it.
The coordinates will be MNI305 space. You can read these into matlab
with read_label.m. These will need to be converted to MNI152. See
http://surfer.nmr.mgh.harvard.edu/fswiki/CoordinateSystems, example 8.
You can then compute the centroid or average or whatever.
On 7/4/17 10:10 AM, AKUDJEDU, THEOPHILUS wrote:
Hi All,
I am trying to visualise nodes of a brain network reconstructed using
FreeSurfer Desikan-Killiany Atlas parcellation scheme
(aparc+aseg.mgz) on Brain Net Viewer and Network Based Statistics
software.
In order to do so, I need to upload a .txt file listing Freesurfer
labels coordinates in MNI space. Is there any way I can get a list of
MNI coordinates for my set of labels?
Many thanks,
Theo
_______________________________________________
Freesurfer mailing list
[email protected]
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
[email protected]
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
