does this happen every time you run it? The message said that the job was killed, which suggests something outside of recon-all (eg, if you were running it on a cluster, sometimes a job will get killed if it runs out of memory or runs too long).
On 08/23/2017 02:30 PM, Cara Bohon wrote: > I have a couple of subjects "exited with ERRORS" after running almost 48 > hours (when my others all took about 13-15 hours on the same server). Both > exited during Fix Topology lh. > > The only time "error" appears is in this line: IFLAG= -1 LINE SEARCH FAILED. > SEE DOCUMENTATION OF ROUTINE MCSRCH ERROR RETURN OF LINE SEARCH: INFO= 4 > POSSIBLE CAUSES: FUNCTION OR GRADIENT ARE INCORRECT OR INCORRECT > TOLERANCESoutof QuasiNewtonEMA: 011: -log(p) = -0.0 tol 0.000010 - which > prior messages to this list suggest is not meaningful or problematic. > > I am brand new to Freesurfer, so I'm not quite sure where to start in > troubleshooting. The orig.mgz file looks fine to me, but maybe I'm missing > something. Any other tips for things to check? I'm attaching a recon-all.log > file in case that is helpful. I am running Freesurfer 5.3.0 on Linux. > > Thanks for any tips on addressing the error! > > -Cara > > > _______________________________________________ > Freesurfer mailing list > [email protected] > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center [email protected] Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list [email protected] https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
