Please see the attached log file. Thanks, Tugce
On 11/16/17, 11:35 AM, "freesurfer-boun...@nmr.mgh.harvard.edu on behalf of
Douglas N Greve" <freesurfer-boun...@nmr.mgh.harvard.edu on behalf of
gr...@nmr.mgh.harvard.edu> wrote:
can you send the entire log file?
On 11/16/2017 11:32 AM, Duran, Tugce wrote:
>
> Dear FreeSurfer Experts,
>
> I’m recently getting an error in make_average_subject and can’t find
> the reason.
>
> Please see the following for the error log from recon-all.log:
>
> *Loading aseg from
>
/gpfs/projects/RadImagSci/CFN/test-SDA-import/VTRAK4/xserveraids/vtrak4/mci/IMAGENE/NIFTI_CENTRAL/IMAGENE_BL_DENOISED_DEOBLIQUE_FREESURFER60_DEFAULT_KARST_10092017_RES/fsaverage_denoised-deoblique-default-nov-15-2017-ALL_DX_karstdesktop/mri/aseg.presurf.hypos.mgz*
>
> *ASeg Vox2RAS: -----------*
>
> *-1.00000 0.00000 0.00000 128.00000;*
>
> *0.00000 0.00000 1.00000 -128.00000;*
>
> *0.00000 -1.00000 0.00000 128.00000;*
>
> *0.00000 0.00000 0.00000 1.00000;*
>
> *mghRead(mri/norm.mgz, -1): could not open file*
>
> *-------------------------*
>
> **
>
> *Labeling Slice*
>
> *relabeling unlikely voxels in interior of white matter*
>
> *mri/norm.mgz: could not load norm volume from (null)*
>
> **
>
> *Linux i1.karst.uits.iu.edu 2.6.32-696.13.2.el6.x86_64 #1 SMP Fri Sep
> 22 12:32:14 EDT 2017 x86_64 x86_64 x86_64 GNU/Linux*
>
> **
>
> *recon-all -s
> fsaverage_denoised-deoblique-default-nov-15-2017-ALL_DX_karstdesktop
> exited with ERRORS at Wed Nov 15 19:14:17 EST 2017*
>
> **
>
> **
>
> It appears that during the process it doesn’t create the norm.mgz file
> to read or open it in the later processes (I think?). What can I do to
> fix this error?
>
> Thanks,
>
> Tugce**
>
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Douglas N. Greve, Ph.D.
MGH-NMR Center
gr...@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the
e-mail
contains patient information, please contact the Partners Compliance
HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in
error
but does not contain patient information, please contact the sender and
properly
dispose of the e-mail.
recon-all.log
Description: recon-all.log
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
