Dear Bruce, Many thanks for you answer!
I am trying to rerun the cortical reconstruction with the version 6.0 but I got the following error. May I have a license for this Freesurfer version 6.0? Thanks a lot for your kind help! Best regards, Mohamed -------------------------------------------------------------------------- ERROR: Invalid FreeSurfer license key found in license file /usr/local/freesurfer/.license If you are outside the NMR-Martinos Center, go to http://surfer.nmr.mgh.harvard.edu/registration.html to get a valid license file (it's free). If you are inside the NMR-Martinos Center, make sure to source the standard environment. -------------------------------------------------------------------------- ----- Mail original ----- De: "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> À: "Freesurfer support list" <freesurfer@nmr.mgh.harvard.edu> Envoyé: Mardi 9 Janvier 2018 14:50:16 Objet: Re: [Freesurfer] freesurfer segmentation: perirhinal Roi Hi Mohamed I'm pretty sure this was an issue with the ribbon-filling in V5 that is better in V6. Try using it and see if it is fixed. cheers Bruce On Tue, 9 Jan 2018, m.ba...@uliege.be wrote: > Dear Freesurfer experts, > > We would like to use volume and cortical thickness measures obtained for the > perirhinal cortex in Freesurfer 5. When checking the region that has been > segmented (using lh/rh.perirhinal.label), we noticed that the ROI does not > seem to cover the entire cortical thickness of the region. On the coronal > slice shown in example (attached file), one can see that there are still a > few voxels of gray matter between the external border of the ROI and the > external boundary of the cortex. How reliable is this segmentation? Is there > a reason why the ROI appears so thin? > > Many thanks in advance, > > Best regards, > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail. -- Dr. Mohamed Ali Bahri, 1er Logisticien de Recherche, Université de Liège - University of Liège GIGA-Cyclotron Research Centre: In Vivo Imaging, Bât B30, Quartier Agora Allée du six Aout n°8 4000 Liège, Belgium m.ba...@uliege.be Tel : + 32-4-3662304 _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
