Most of FS/recon-all will run using the T1 only. The T2 can be used to refine
the pial surface (-T2 T2file.mgz -T2pial)
On 9/18/18 4:56 AM, limiyu wrote:
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Dear developers
I have a question on how could I segment two registered MRI images and
get only one segmentation result, by command recon-all ?
In details, I have two MRI images which are T1-weighted and
T2-weighted. They are the photos of one brain. How could I input both of them
into Freesufer and output one segmentation result, which takes both of the
input into consideration.
I know that command "recon-all -all" could output the segmentation but
do not know what to do when there are multiple inputs.
Looking forward to your reply
Thank you
Mingyuan Liu
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