External Email - Use Caution
Hi,
Right after calling the command and getting the segmentation error it only
prints out this:
#--------------------------------------------
#@# Hippocampal Subfields processing (T1) left Mon Nov 5 11:37:11 CET 2018
------------------------------------------
Setting up environment variables
---
DYLD_LIBRARY_PATH is
.:/Applications/freesurfer/MCRv84//runtime/maci64:/Applications/freesurfer/MCRv84//bin/maci64:/Applications/freesurfer/MCRv84//sys/os/maci64:/Applications/freesurfer/lib/gcc/lib:
PostVMInit failed to initialize com.mathworks.mwswing.MJStartupForDesktop
------------------------------------------------------------------------
Segmentation violation detected at Mon Nov 5 11:37:15 2018
------------------------------------------------------------------------
Configuration:
Crash Decoding : Disabled
Current Visual : Quartz
On Tue, Oct 30, 2018 at 5:39 PM Iglesias Gonzalez, Eugenio <
[email protected]> wrote:
> External Email - Use Caution
>
> Hi Jaime,
>
> Can you please send us the output you get between calling the command and
> the error?
>
> Cheers,
>
> /E
>
>
>
> --
>
> Juan Eugenio Iglesias
>
> Centre for Medical Image Computing (CMIC)
>
> Department of Medical Physics and Biomedical Engineering
>
> University College London
>
> http://www.jeiglesias.com
>
>
>
>
>
>
>
> *From: *<[email protected]> on behalf of Jaime Gomez
> <[email protected]>
> *Reply-To: *Freesurfer support list <[email protected]>
> *Date: *Tuesday, 30 October 2018 at 12:33
> *To: *"[email protected]" <[email protected]>
> *Subject: *[Freesurfer] Matlab Segmentation error when running
> hippocampal segmentation in dev version
>
>
>
> * External Email - Use Caution *
>
>
>
> Hi,
>
> I think I have the same or similar error than
>
> [Freesurfer] error in hippocampal subfields and nuclei of amygdala
> segmentation
> <https://www.mail-archive.com/[email protected]/msg59953.html>
>
> I am running segmentHA_T1.sh for one subject and I get this matlab
> segmentation error bellow:
>
> I have 16GB memory in a MacOS, and when the process finished with the
> error I still have 7 GB of memory free to use.
>
> I installed the Matlab R2014b runtime as it is explained here
> <https://surfer.nmr.mgh.harvard.edu/fswiki/HippocampalSubfieldsAndNucleiOfAmygdala>
> and I have a Matlab 2016 installed.
>
>
>
>
>
> Thanks!
>
> Jaime
>
>
>
> ------------------------------------------------------------------------
> Segmentation violation detected at Tue Oct 30 13:06:09 2018
> ------------------------------------------------------------------------
>
> Configuration:
> Crash Decoding : Disabled
> Current Visual : Quartz
> Default Encoding : ISO-8859-1
> MATLAB Architecture: maci64
> MATLAB Root : /Applications/freesurfer/MCRv84
> MATLAB Version : 8.4.0.150421 (R2014b)
> Operating System : Darwin 18.0.0 Darwin Kernel Version 18.0.0: Wed Aug
> 22 20:13:40 PDT 2018; root:xnu-4903.201.2~1/RELEASE_X86_64 x86_64
> Processor ID : x86 Family 6 Model 62 Stepping 4, GenuineIntel
> Software OpenGL : 0
> Virtual Machine : Java 1.7.0_55-b13 with Oracle Corporation Java
> HotSpot(TM) 64-Bit Server VM mixed mode
> Window System : Quartz
>
> Fault Count: 1
>
>
> Abnormal termination:
> Segmentation violation
>
> Register State (from fault):
> RAX = 00007fb47210a800 RBX = 00007fb47210a800
> RCX = 00007000050c92f0 RDX = 0000000112fb097e
> RSP = 00007fb47210a800 RBP = 00009b63050c92f0
> RSI = 00007fb470d3f910 RDI = 0000000000000000
>
> R8 = 00007fb47691da70 R9 = 00007fb47210a800
> R10 = 000000011d44376a R11 = 0000000000000000
> R12 = 00007000050c9350 R13 = 0000000112dfe3c7
> R14 = 00007000050c93c0 R15 = 000000011d443777
>
> RIP = 0000000117f94f40 RFL = 00007fb47691da70
>
> CS = 00009b6300305bc3 FS = 000000011d44376a GS = 00007fb47210a9e8
>
> Stack Trace (from fault):
> [ 0] 0x0000000107817e64
> /Applications/freesurfer/MCRv84//bin/maci64/libmwfl.dylib+00028260
> _ZN2fl4diag15stacktrace_base7captureERKNS0_14thread_contextEm+00000052
> [ 1] 0x000000010781ba2a
> /Applications/freesurfer/MCRv84//bin/maci64/libmwfl.dylib+00043562
> _ZN2fl4test17terminate_handledEv+00000906
> [ 2] 0x000000010781b477
> /Applications/freesurfer/MCRv84//bin/maci64/libmwfl.dylib+00042103
> _ZN2fl4diag13terminate_logEPKcPK17__darwin_ucontext+00000119
> [ 3] 0x000000010e399b7a
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00387962
> _Z32mnRunPathDependentInitializationv+00003146
> [ 4] 0x000000010e399e58
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00388696
> _Z32mnRunPathDependentInitializationv+00003880
> [ 5] 0x000000010e397733
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00378675
> mnFatalSignalHandler+00000275
> [ 6] 0x00007fff6b0d9b3d
> /usr/lib/system/libsystem_platform.dylib+00019261 _sigtramp+00000029
> [ 7] 0x0000000112dff6f8
> /Applications/freesurfer/MCRv84/sys/java/jre/maci64/jre//lib/server/libjvm.dylib+03192568
> _ZN23JNI_ArgumentPusherVaArg7iterateEy+00000000
> [ 8] 0x0000000112defd67
> /Applications/freesurfer/MCRv84/sys/java/jre/maci64/jre//lib/server/libjvm.dylib+03128679
> jni_GetMethodID+00000126
> [ 9] 0x00000001117b1271
> /Applications/freesurfer/MCRv84//bin/maci64/libmwjmi.dylib+00160369
> _Z12mljGetMethodP7_jclassPKcS2_+00000049
> [ 10] 0x000000011cc9e366
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00598886
> _ZN2ui14JavaScreenData20getPrimaryScreenRectEv+00000150
> [ 11] 0x000000011cca3ef4
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00622324
> _ZN10ScreenImpl13getScreenSizeEv+00000036
> [ 12] 0x000000011cca22e2
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00615138
> _ZNK2ui24RootScreenAndPointerImpl13getScreenSizeEv+00000018
> [ 13] 0x000000011cca6f58
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00634712
> _ZN2ui4Root17getScreenSizeImplEPN4mcos11COSPropInfoEPNS1_9COSClientEPNS1_12COSInterfaceE+00000040
> [ 14] 0x000000011d0ddd13
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+05053715
> _ZN7hgutils6StubPIIN2ui4RootENS_15PropertyStorageIN8graphics8datatype8PositionENS_6NoModeENS_21NoSerializableStorageEEEE8getValueEPN4mcos12COSInterfaceE+00000099
> [ 15] 0x000000010f3e9a6e
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00371310
> _ZN4mcos13COSInterfaceI18igetDirectInternalEPNS_12COSInterfaceE+00000110
> [ 16] 0x000000010f3dfc80
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00330880
> _ZN4mcos13COSInterfaceI10igetDirectEPKNS_9COSClientEPNS_12COSInterfaceE+00000128
> [ 17] 0x000000010f44f12b
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00786731
> _ZN4mcos28getValueOfKnownClassPropertyEP11mxArray_tagmPKS0_NS_15COSInterfacePtrEPKNS_9COSClientE+00000411
> [ 18] 0x000000010f450070
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00790640
> _ZN4mcos16getPropertyValueEPKNS_9COSClientEPNS_8COSClassEPK11mxArray_tagPKcmPS5_+00000416
> [ 19] 0x000000010f450483
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00791683
> _ZNK4mcos5GetMI6invokeEPKNS_9COSClientERiPNS_8COSValueEiPKS5_+00000355
> [ 20] 0x000000010f4381f2
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00692722
> _ZN24OpaqueMethodCallMetaData11callCMethodEPN4mcos13COSMethodInfoEPP11mxArray_tagPKNS0_9COSClientE+00000466
> [ 21] 0x000000010f43af4e
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00704334
> _ZN24OpaqueMethodCallMetaData23callMethodOrConstructorEP11mxArray_tagbiPS1_iPPKS0_bPKN4mcos9COSClientEPS9_PPNS6_13COSMethodInfoE+00000494
> [ 22] 0x000000010f438b3e
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00695102
> _Z18mcosCallMethodImplN4mcos9COSNameIDES0_PKNS_9COSClientEiPP11mxArray_tagiPPKS4_bb+00000286
> [ 23] 0x000000010f439a82
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00699010
> _Z12omCallMethodN4mcos9COSNameIDES0_PKNS_9COSClientEiPP11mxArray_tagiPPKS4_b+00000114
> [ 24] 0x000000011e44c6c2
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhgutils.dylib+00440002
> _ZN7hgutils17MCOSMethodInvoker6invokeEPKN4mcos9COSClientERiPNS1_8COSValueEiPKS6_+00000866
> [ 25] 0x000000011e44c220
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhgutils.dylib+00438816
> _ZN7hgutils14callMCOSMethodERKN4mcos9COSNameIDERKNS0_12MemberAccessEPNS0_8COSClassEPKNS0_9COSClientERiPNS0_8COSValueEiPKSD_+00000112
> [ 26] 0x000000011e44c1a7
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhgutils.dylib+00438695
> _ZN7hgutils14callMCOSMethodERKN4mcos9COSNameIDEPNS0_8COSClassEPKNS0_9COSClientERiPNS0_8COSValueEiPKSA_+00000055
> [ 27] 0x000000011e432292
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhgutils.dylib+00332434
> _ZThn8_NK7hgutils22HGPropHandlerClassInfo16areChildrenSavedEv+00029170
> [ 28] 0x000000010f4381f2
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00692722
> _ZN24OpaqueMethodCallMetaData11callCMethodEPN4mcos13COSMethodInfoEPP11mxArray_tagPKNS0_9COSClientE+00000466
> [ 29] 0x000000010f43af4e
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00704334
> _ZN24OpaqueMethodCallMetaData23callMethodOrConstructorEP11mxArray_tagbiPS1_iPPKS0_bPKN4mcos9COSClientEPS9_PPNS6_13COSMethodInfoE+00000494
> [ 30] 0x000000010f439d41
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00699713
> _Z22omCallMethodWithClientP11mxArray_tagbS0_iPS0_iPPKS_PKN4mcos9COSClientEPS8_PPNS5_13COSMethodInfoE+00000417
> [ 31] 0x000000010f4c5930
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01272112
> _Z18omCallOpaqueMethodP11mxArray_tagS0_iPS0_iPPKS_+00000112
> [ 32] 0x000000011c4ed353
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhgbuiltins.dylib+00193363
> hgGetWrapper+00000435
> [ 33] 0x000000010f270cc6
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00117958
> _ZN11Mfh_builtin11dispatch_mfEiPP11mxArray_tagiS2_+00000086
> [ 34] 0x000000010f25912d
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00020781
> _ZN13Mfh_MATLAB_fn11dispatch_fhEiPP11mxArray_tagiS2_+00000333
> [ 35] 0x000000010e616d62
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01523042
> _Z19inDispatchFromStackiPKcii+00001650
> [ 36] 0x000000010e5b8dd8
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01138136
> inPcodeWalker+00022552
> [ 37] 0x000000010e5b5917
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01124631
> inPcodeWalker+00009047
> [ 38] 0x000000010e5b0fb7
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01105847
> inInterPcode+00000935
> [ 39] 0x000000010e5b21c6
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01110470
> _Z26inExecuteMFunctionOrScriptP6Mfh_mpb+00000886
> [ 40] 0x000000010e6541f1
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01774065
> _Z10inRunMfileiPP11mxArray_tagiS1_P6Mfh_mpP15inWorkSpace_tag+00002337
> [ 41] 0x000000010f2b5c28
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00400424
> _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000600
> [ 42] 0x000000010f499e8e
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01093262
> _ZNK4mcos17MScopedMethodInfo6invokeEPKNS_9COSClientERiPNS_8COSValueEiPKS5_+00000606
> [ 43] 0x000000010f437597
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00689559
> _ZN24OpaqueMethodCallMetaData11callMMethodEPN4mcos13COSMethodInfoEPP11mxArray_tagPKNS0_9COSClientE+00000359
> [ 44] 0x000000010f43ae63
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00704099
> _ZN24OpaqueMethodCallMetaData23callMethodOrConstructorEP11mxArray_tagbiPS1_iPPKS0_bPKN4mcos9COSClientEPS9_PPNS6_13COSMethodInfoE+00000259
> [ 45] 0x000000010f439d41
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00699713
> _Z22omCallMethodWithClientP11mxArray_tagbS0_iPS0_iPPKS_PKN4mcos9COSClientEPS8_PPNS5_13COSMethodInfoE+00000417
> [ 46] 0x000000010f4c5ee8
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01273576
> _Z18omCallStaticMethodP11mxArray_tagiPS0_iPPKS_+00000088
> [ 47] 0x000000010f54ee64
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01834596
> _ZN17Mfh_opaque_static11dispatch_mfEiPP11mxArray_tagiS2_+00000116
> [ 48] 0x000000010f25912d
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00020781
> _ZN13Mfh_MATLAB_fn11dispatch_fhEiPP11mxArray_tagiS2_+00000333
> [ 49] 0x000000010f54bacc
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01821388
> _ZN10Mfh_opaque11dispatch_fhEiPP11mxArray_tagiS2_+00000028
> [ 50] 0x000000010e616d62
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01523042
> _Z19inDispatchFromStackiPKcii+00001650
> [ 51] 0x000000010e56c59e
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+00824734
> inCallFcnFromReference+00000110
> [ 52] 0x000000010e5b5003
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01122307
> inPcodeWalker+00006723
> [ 53] 0x000000010e5b0fb7
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01105847
> inInterPcode+00000935
> [ 54] 0x000000010e5b21c6
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01110470
> _Z26inExecuteMFunctionOrScriptP6Mfh_mpb+00000886
> [ 55] 0x000000010e6541f1
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01774065
> _Z10inRunMfileiPP11mxArray_tagiS1_P6Mfh_mpP15inWorkSpace_tag+00002337
> [ 56] 0x000000010f2b5c55
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00400469
> _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000645
> [ 57] 0x000000010e616d62
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01523042
> _Z19inDispatchFromStackiPKcii+00001650
> [ 58] 0x000000010e5b8dd8
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01138136
> inPcodeWalker+00022552
> [ 59] 0x000000010e5b5702
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01124098
> inPcodeWalker+00008514
> [ 60] 0x000000010e5b0fb7
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01105847
> inInterPcode+00000935
> [ 61] 0x000000010e5b0cad
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01105069
> inInterPcode+00000157
> [ 62] 0x000000010e5a7b9f
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01067935
> _ZN12InterpBridge33DoMatlabFcnCallInDesiredWorkspaceEiPP11mxArray_tagiPPKS0_P13Mfh_MATLAB_fnP15inWorkSpace_tag+00004015
> [ 63] 0x000000010e5a9a79
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01075833
> _Z25in_local_call_with_setjmpIN5boost3_bi6bind_tIvPFvPiP12_pcodeheaderS3_PP11mxArray_tag12inDebugCheckENS1_5list5INS1_5valueIS3_EENSD_IS5_EENS0_3argILi1EEENSG_ILi2EEENSD_IS9_EEEEEEEN6mlutil14cmddistributor17inExecutionStatusET_S3_S8_b+00000073
> [ 64] 0x000000010e5a528d
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01057421
> _Z12inEvalStringP15_memory_contextRKSbItSt11char_traitsItESaItEE8EvalTypeiPP11mxArray_tag12inDebugCheckP12_pcodeheaderPib+00002877
> [ 65] 0x000000010e5a57cd
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01058765
> _ZN12InterpBridge22EvalCmdWithLocalReturnERKSbItSt11char_traitsItESaItEEPibb+00000141
> [ 66] 0x000000010e5a5c05
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01059845
> _ZN12InterpBridge7EvalCmdERKSbItSt11char_traitsItESaItEEb+00000021
> [ 67] 0x000000010e503347
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+00394055
> inEvalCmd+00000119
> [ 68] 0x000000010e3717fa
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00223226
> _Z16mnRunLoginScriptv+00000586
> [ 69] 0x000000010e398f63
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00384867
> _Z32mnRunPathDependentInitializationv+00000051
> [ 70] 0x000000010e37f80c
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00280588
> _ZN11mcrInstance26init_on_interpreter_threadEP11MfileReaderP13MexFileReader+00000988
> [ 71] 0x000000010e38dfb8
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00339896
> _ZN5boost6detail8function21function_obj_invoker0INS_3_bi6bind_tIbNS_4_mfi3mf2Ib11mcrInstanceP11MfileReaderP13MexFileReaderEENS3_5list3INS3_5valueIPS7_EENSE_IS9_EENSE_ISB_EEEEEEbE6invokeERNS1_15function_bufferE+00000040
> [ 72] 0x000000010e38cdc1
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00335297
> _ZN3mcr7runtime17InterpreterThread4Impl22TypedInvocationRequestIbE29doNotRethrowMxArrayExceptionsERKN5boost8functionIFbvEEE+00000033
> [ 73] 0x000000010e38dbd9
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00338905
> _ZN5boost6detail11task_objectIbNS_3_bi6bind_tIbPFbRKNS_8functionIFbvEEEENS2_5list1INS2_5valueIS6_EEEEEEE6do_runEv+00000025
> [ 74] 0x000000010e38d276
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00336502
> _ZN5boost6detail9task_baseIbE3runEv+00000166
> [ 75] 0x000000010e38d067
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00335975
> _ZN3mcr7runtime17InterpreterThread4Impl22TypedInvocationRequestIbE3runEv+00000023
> [ 76] 0x000000010e357f90
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00118672
> _ZN3mcr7runtime17InterpreterThread4Impl26invocation_request_handlerEl+00000032
> [ 77] 0x0000000105632005
> /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+00196613
> _ZN10eventqueue18UserEventQueueImpl5flushEv+00001205
> [ 78] 0x000000010facca65
> /Applications/freesurfer/MCRv84//bin/maci64/libmwuix.dylib+00043621
> _Z25isHandleUserEventCallbackPFvPvE+00000501
> [ 79] 0x0000000105701a45
> /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+01047109
> _Z21svWS_ProcessCallbacksv+00016693
> [ 80] 0x00000001056fd152
> /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+01028434
> _Z25svWS_ProcessPendingEventsiib+00000834
> [ 81] 0x00000001056fce5e
> /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+01027678
> _Z25svWS_ProcessPendingEventsiib+00000078
> [ 82] 0x000000010e35818f
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00119183
> _ZN3mcr7runtime17InterpreterThread4Impl14process_eventsERKN5boost10shared_ptrIS2_EE+00000095
> [ 83] 0x000000010e35849f
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00119967
> _ZN3mcr7runtime17InterpreterThread4Impl3runERKN5boost10shared_ptrIS2_EEPNS2_12init_contextE+00000335
> [ 84] 0x000000010e33ed1b
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00015643
> _Z26run_init_and_handle_eventsPv+00000059
> [ 85] 0x00007fff6b0e233d
> /usr/lib/system/libsystem_pthread.dylib+00013117 _pthread_body+00000126
> [ 86] 0x00007fff6b0e52a7
> /usr/lib/system/libsystem_pthread.dylib+00025255 _pthread_start+00000070
> [ 87] 0x00007fff6b0e1425
> /usr/lib/system/libsystem_pthread.dylib+00009253 thread_start+00000013
>
>
> If this problem is reproducible, please submit a Service Request via:
> http://www.mathworks.com/support/contact_us/
>
> A technical support engineer might contact you with further information.
>
> Thank you for your help.** This crash report has been saved to disk as
> /Users/jaime/matlab_crash_dump.9878-1 **
>
>
>
> ------------------------------------------------------------------------
> Segmentation violation detected at Tue Oct 30 13:06:10 2018
> ------------------------------------------------------------------------
>
> Configuration:
> Crash Decoding : Disabled
> Current Visual : Quartz
> Default Encoding : ISO-8859-1
> MATLAB Architecture: maci64
> MATLAB Root : /Applications/freesurfer/MCRv84
> MATLAB Version : 8.4.0.150421 (R2014b)
> Operating System : Darwin 18.0.0 Darwin Kernel Version 18.0.0: Wed Aug
> 22 20:13:40 PDT 2018; root:xnu-4903.201.2~1/RELEASE_X86_64 x86_64
> Processor ID : x86 Family 6 Model 62 Stepping 4, GenuineIntel
> Software OpenGL : 0
> Virtual Machine : Java 1.7.0_55-b13 with Oracle Corporation Java
> HotSpot(TM) 64-Bit Server VM mixed mode
> Window System : Quartz
>
> Fault Count: 2
>
>
> Abnormal termination:
> Segmentation violation
>
> Register State (from fault):
> RAX = 00007fb47210a800 RBX = 00007fb47210a800
> RCX = 00007000050c92f0 RDX = 0000000112fb097e
> RSP = 00007fb47210a800 RBP = 00009b63050c92f0
> RSI = 00007fb470d3f910 RDI = 0000000000000000
>
> R8 = 00007fb47691da70 R9 = 00007fb47210a800
> R10 = 000000011d44376a R11 = 0000000000000000
> R12 = 00007000050c9350 R13 = 0000000112dfe3c7
> R14 = 00007000050c93c0 R15 = 000000011d443777
>
> RIP = 0000000117f94f40 RFL = 00007fb47691da70
>
> CS = 00009b6300305bc3 FS = 000000011d44376a GS = 00007fb47210a9e8
>
> Stack Trace (from fault):
> [ 0] 0x0000000107817e64
> /Applications/freesurfer/MCRv84//bin/maci64/libmwfl.dylib+00028260
> _ZN2fl4diag15stacktrace_base7captureERKNS0_14thread_contextEm+00000052
> [ 1] 0x000000010781ba2a
> /Applications/freesurfer/MCRv84//bin/maci64/libmwfl.dylib+00043562
> _ZN2fl4test17terminate_handledEv+00000906
> [ 2] 0x000000010781b477
> /Applications/freesurfer/MCRv84//bin/maci64/libmwfl.dylib+00042103
> _ZN2fl4diag13terminate_logEPKcPK17__darwin_ucontext+00000119
> [ 3] 0x000000010e399b7a
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00387962
> _Z32mnRunPathDependentInitializationv+00003146
> [ 4] 0x000000010e399e58
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00388696
> _Z32mnRunPathDependentInitializationv+00003880
> [ 5] 0x000000010e397733
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00378675
> mnFatalSignalHandler+00000275
> [ 6] 0x00007fff6b0d9b3d
> /usr/lib/system/libsystem_platform.dylib+00019261 _sigtramp+00000029
> [ 7] 0x0000000112dff6f8
> /Applications/freesurfer/MCRv84/sys/java/jre/maci64/jre//lib/server/libjvm.dylib+03192568
> _ZN23JNI_ArgumentPusherVaArg7iterateEy+00000000
> [ 8] 0x0000000112defd67
> /Applications/freesurfer/MCRv84/sys/java/jre/maci64/jre//lib/server/libjvm.dylib+03128679
> jni_GetMethodID+00000126
> [ 9] 0x00000001117b1271
> /Applications/freesurfer/MCRv84//bin/maci64/libmwjmi.dylib+00160369
> _Z12mljGetMethodP7_jclassPKcS2_+00000049
> [ 10] 0x000000011cc9e366
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00598886
> _ZN2ui14JavaScreenData20getPrimaryScreenRectEv+00000150
> [ 11] 0x000000011cca3ef4
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00622324
> _ZN10ScreenImpl13getScreenSizeEv+00000036
> [ 12] 0x000000011cca22e2
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00615138
> _ZNK2ui24RootScreenAndPointerImpl13getScreenSizeEv+00000018
> [ 13] 0x000000011cca6f58
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00634712
> _ZN2ui4Root17getScreenSizeImplEPN4mcos11COSPropInfoEPNS1_9COSClientEPNS1_12COSInterfaceE+00000040
> [ 14] 0x000000011d0ddd13
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+05053715
> _ZN7hgutils6StubPIIN2ui4RootENS_15PropertyStorageIN8graphics8datatype8PositionENS_6NoModeENS_21NoSerializableStorageEEEE8getValueEPN4mcos12COSInterfaceE+00000099
> [ 15] 0x000000010f3e9a6e
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00371310
> _ZN4mcos13COSInterfaceI18igetDirectInternalEPNS_12COSInterfaceE+00000110
> [ 16] 0x000000010f3dfc80
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00330880
> _ZN4mcos13COSInterfaceI10igetDirectEPKNS_9COSClientEPNS_12COSInterfaceE+00000128
> [ 17] 0x000000010f44f12b
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00786731
> _ZN4mcos28getValueOfKnownClassPropertyEP11mxArray_tagmPKS0_NS_15COSInterfacePtrEPKNS_9COSClientE+00000411
> [ 18] 0x000000010f450070
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00790640
> _ZN4mcos16getPropertyValueEPKNS_9COSClientEPNS_8COSClassEPK11mxArray_tagPKcmPS5_+00000416
> [ 19] 0x000000010f450483
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00791683
> _ZNK4mcos5GetMI6invokeEPKNS_9COSClientERiPNS_8COSValueEiPKS5_+00000355
> [ 20] 0x000000010f4381f2
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00692722
> _ZN24OpaqueMethodCallMetaData11callCMethodEPN4mcos13COSMethodInfoEPP11mxArray_tagPKNS0_9COSClientE+00000466
> [ 21] 0x000000010f43af4e
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00704334
> _ZN24OpaqueMethodCallMetaData23callMethodOrConstructorEP11mxArray_tagbiPS1_iPPKS0_bPKN4mcos9COSClientEPS9_PPNS6_13COSMethodInfoE+00000494
> [ 22] 0x000000010f438b3e
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00695102
> _Z18mcosCallMethodImplN4mcos9COSNameIDES0_PKNS_9COSClientEiPP11mxArray_tagiPPKS4_bb+00000286
> [ 23] 0x000000010f439a82
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00699010
> _Z12omCallMethodN4mcos9COSNameIDES0_PKNS_9COSClientEiPP11mxArray_tagiPPKS4_b+00000114
> [ 24] 0x000000011e44c6c2
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhgutils.dylib+00440002
> _ZN7hgutils17MCOSMethodInvoker6invokeEPKN4mcos9COSClientERiPNS1_8COSValueEiPKS6_+00000866
> [ 25] 0x000000011e44c220
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhgutils.dylib+00438816
> _ZN7hgutils14callMCOSMethodERKN4mcos9COSNameIDERKNS0_12MemberAccessEPNS0_8COSClassEPKNS0_9COSClientERiPNS0_8COSValueEiPKSD_+00000112
> [ 26] 0x000000011e44c1a7
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhgutils.dylib+00438695
> _ZN7hgutils14callMCOSMethodERKN4mcos9COSNameIDEPNS0_8COSClassEPKNS0_9COSClientERiPNS0_8COSValueEiPKSA_+00000055
> [ 27] 0x000000011e432292
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhgutils.dylib+00332434
> _ZThn8_NK7hgutils22HGPropHandlerClassInfo16areChildrenSavedEv+00029170
> [ 28] 0x000000010f4381f2
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00692722
> _ZN24OpaqueMethodCallMetaData11callCMethodEPN4mcos13COSMethodInfoEPP11mxArray_tagPKNS0_9COSClientE+00000466
> [ 29] 0x000000010f43af4e
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00704334
> _ZN24OpaqueMethodCallMetaData23callMethodOrConstructorEP11mxArray_tagbiPS1_iPPKS0_bPKN4mcos9COSClientEPS9_PPNS6_13COSMethodInfoE+00000494
> [ 30] 0x000000010f439d41
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00699713
> _Z22omCallMethodWithClientP11mxArray_tagbS0_iPS0_iPPKS_PKN4mcos9COSClientEPS8_PPNS5_13COSMethodInfoE+00000417
> [ 31] 0x000000010f4c5930
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01272112
> _Z18omCallOpaqueMethodP11mxArray_tagS0_iPS0_iPPKS_+00000112
> [ 32] 0x000000011c4ed353
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhgbuiltins.dylib+00193363
> hgGetWrapper+00000435
> [ 33] 0x000000010f270cc6
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00117958
> _ZN11Mfh_builtin11dispatch_mfEiPP11mxArray_tagiS2_+00000086
> [ 34] 0x000000010f25912d
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00020781
> _ZN13Mfh_MATLAB_fn11dispatch_fhEiPP11mxArray_tagiS2_+00000333
> [ 35] 0x000000010e616d62
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01523042
> _Z19inDispatchFromStackiPKcii+00001650
> [ 36] 0x000000010e5b8dd8
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01138136
> inPcodeWalker+00022552
> [ 37] 0x000000010e5b5917
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01124631
> inPcodeWalker+00009047
> [ 38] 0x000000010e5b0fb7
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01105847
> inInterPcode+00000935
> [ 39] 0x000000010e5b21c6
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01110470
> _Z26inExecuteMFunctionOrScriptP6Mfh_mpb+00000886
> [ 40] 0x000000010e6541f1
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01774065
> _Z10inRunMfileiPP11mxArray_tagiS1_P6Mfh_mpP15inWorkSpace_tag+00002337
> [ 41] 0x000000010f2b5c28
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00400424
> _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000600
> [ 42] 0x000000010f499e8e
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01093262
> _ZNK4mcos17MScopedMethodInfo6invokeEPKNS_9COSClientERiPNS_8COSValueEiPKS5_+00000606
> [ 43] 0x000000010f437597
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00689559
> _ZN24OpaqueMethodCallMetaData11callMMethodEPN4mcos13COSMethodInfoEPP11mxArray_tagPKNS0_9COSClientE+00000359
> [ 44] 0x000000010f43ae63
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00704099
> _ZN24OpaqueMethodCallMetaData23callMethodOrConstructorEP11mxArray_tagbiPS1_iPPKS0_bPKN4mcos9COSClientEPS9_PPNS6_13COSMethodInfoE+00000259
> [ 45] 0x000000010f439d41
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+00699713
> _Z22omCallMethodWithClientP11mxArray_tagbS0_iPS0_iPPKS_PKN4mcos9COSClientEPS8_PPNS5_13COSMethodInfoE+00000417
> [ 46] 0x000000010f4c5ee8
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01273576
> _Z18omCallStaticMethodP11mxArray_tagiPS0_iPPKS_+00000088
> [ 47] 0x000000010f54ee64
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01834596
> _ZN17Mfh_opaque_static11dispatch_mfEiPP11mxArray_tagiS2_+00000116
> [ 48] 0x000000010f25912d
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00020781
> _ZN13Mfh_MATLAB_fn11dispatch_fhEiPP11mxArray_tagiS2_+00000333
> [ 49] 0x000000010f54bacc
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcos.dylib+01821388
> _ZN10Mfh_opaque11dispatch_fhEiPP11mxArray_tagiS2_+00000028
> [ 50] 0x000000010e616d62
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01523042
> _Z19inDispatchFromStackiPKcii+00001650
> [ 51] 0x000000010e56c59e
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+00824734
> inCallFcnFromReference+00000110
> [ 52] 0x000000010e5b5003
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01122307
> inPcodeWalker+00006723
> [ 53] 0x000000010e5b0fb7
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01105847
> inInterPcode+00000935
> [ 54] 0x000000010e5b21c6
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01110470
> _Z26inExecuteMFunctionOrScriptP6Mfh_mpb+00000886
> [ 55] 0x000000010e6541f1
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01774065
> _Z10inRunMfileiPP11mxArray_tagiS1_P6Mfh_mpP15inWorkSpace_tag+00002337
> [ 56] 0x000000010f2b5c55
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_dispatcher.dylib+00400469
> _ZN8Mfh_file11dispatch_fhEiPP11mxArray_tagiS2_+00000645
> [ 57] 0x000000010e616d62
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01523042
> _Z19inDispatchFromStackiPKcii+00001650
> [ 58] 0x000000010e5b8dd8
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01138136
> inPcodeWalker+00022552
> [ 59] 0x000000010e5b5702
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01124098
> inPcodeWalker+00008514
> [ 60] 0x000000010e5b0fb7
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01105847
> inInterPcode+00000935
> [ 61] 0x000000010e5b0cad
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01105069
> inInterPcode+00000157
> [ 62] 0x000000010e5a7b9f
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01067935
> _ZN12InterpBridge33DoMatlabFcnCallInDesiredWorkspaceEiPP11mxArray_tagiPPKS0_P13Mfh_MATLAB_fnP15inWorkSpace_tag+00004015
> [ 63] 0x000000010e5a9a79
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01075833
> _Z25in_local_call_with_setjmpIN5boost3_bi6bind_tIvPFvPiP12_pcodeheaderS3_PP11mxArray_tag12inDebugCheckENS1_5list5INS1_5valueIS3_EENSD_IS5_EENS0_3argILi1EEENSG_ILi2EEENSD_IS9_EEEEEEEN6mlutil14cmddistributor17inExecutionStatusET_S3_S8_b+00000073
> [ 64] 0x000000010e5a528d
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01057421
> _Z12inEvalStringP15_memory_contextRKSbItSt11char_traitsItESaItEE8EvalTypeiPP11mxArray_tag12inDebugCheckP12_pcodeheaderPib+00002877
> [ 65] 0x000000010e5a57cd
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01058765
> _ZN12InterpBridge22EvalCmdWithLocalReturnERKSbItSt11char_traitsItESaItEEPibb+00000141
> [ 66] 0x000000010e5a5c05
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+01059845
> _ZN12InterpBridge7EvalCmdERKSbItSt11char_traitsItESaItEEb+00000021
> [ 67] 0x000000010e503347
> /Applications/freesurfer/MCRv84//bin/maci64/libmwm_interpreter.dylib+00394055
> inEvalCmd+00000119
> [ 68] 0x000000010e3717fa
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00223226
> _Z16mnRunLoginScriptv+00000586
> [ 69] 0x000000010e398f63
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00384867
> _Z32mnRunPathDependentInitializationv+00000051
> [ 70] 0x000000010e37f80c
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00280588
> _ZN11mcrInstance26init_on_interpreter_threadEP11MfileReaderP13MexFileReader+00000988
> [ 71] 0x000000010e38dfb8
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00339896
> _ZN5boost6detail8function21function_obj_invoker0INS_3_bi6bind_tIbNS_4_mfi3mf2Ib11mcrInstanceP11MfileReaderP13MexFileReaderEENS3_5list3INS3_5valueIPS7_EENSE_IS9_EENSE_ISB_EEEEEEbE6invokeERNS1_15function_bufferE+00000040
> [ 72] 0x000000010e38cdc1
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00335297
> _ZN3mcr7runtime17InterpreterThread4Impl22TypedInvocationRequestIbE29doNotRethrowMxArrayExceptionsERKN5boost8functionIFbvEEE+00000033
> [ 73] 0x000000010e38dbd9
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00338905
> _ZN5boost6detail11task_objectIbNS_3_bi6bind_tIbPFbRKNS_8functionIFbvEEEENS2_5list1INS2_5valueIS6_EEEEEEE6do_runEv+00000025
> [ 74] 0x000000010e38d276
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00336502
> _ZN5boost6detail9task_baseIbE3runEv+00000166
> [ 75] 0x000000010e38d067
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00335975
> _ZN3mcr7runtime17InterpreterThread4Impl22TypedInvocationRequestIbE3runEv+00000023
> [ 76] 0x000000010e357f90
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00118672
> _ZN3mcr7runtime17InterpreterThread4Impl26invocation_request_handlerEl+00000032
> [ 77] 0x0000000105632005
> /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+00196613
> _ZN10eventqueue18UserEventQueueImpl5flushEv+00001205
> [ 78] 0x000000010facca65
> /Applications/freesurfer/MCRv84//bin/maci64/libmwuix.dylib+00043621
> _Z25isHandleUserEventCallbackPFvPvE+00000501
> [ 79] 0x0000000105701a45
> /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+01047109
> _Z21svWS_ProcessCallbacksv+00016693
> [ 80] 0x00000001056fd152
> /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+01028434
> _Z25svWS_ProcessPendingEventsiib+00000834
> [ 81] 0x00000001056fce5e
> /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+01027678
> _Z25svWS_ProcessPendingEventsiib+00000078
> [ 82] 0x000000010e35818f
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00119183
> _ZN3mcr7runtime17InterpreterThread4Impl14process_eventsERKN5boost10shared_ptrIS2_EE+00000095
> [ 83] 0x000000010e35849f
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00119967
> _ZN3mcr7runtime17InterpreterThread4Impl3runERKN5boost10shared_ptrIS2_EEPNS2_12init_contextE+00000335
> [ 84] 0x000000010e33ed1b
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00015643
> _Z26run_init_and_handle_eventsPv+00000059
> [ 85] 0x00007fff6b0e233d
> /usr/lib/system/libsystem_pthread.dylib+00013117 _pthread_body+00000126
> [ 86] 0x00007fff6b0e52a7
> /usr/lib/system/libsystem_pthread.dylib+00025255 _pthread_start+00000070
> [ 87] 0x00007fff6b0e1425
> /usr/lib/system/libsystem_pthread.dylib+00009253 thread_start+00000013
>
>
> Abnormal termination:
> Segmentation violation
>
> Register State (from fault):
> RAX = 00007fb47210a800 RBX = 00007fb47210a800
> RCX = 00007000050d1a00 RDX = 0000000112fb097e
> RSP = 00007fb47210a800 RBP = 00009b63050d1a00
> RSI = 00007fb470d3f910 RDI = 0000000000000000
>
> R8 = 00007fb47691da70 R9 = 00007fb47210a800
> R10 = 000000011d44376a R11 = 0000000000000000
> R12 = 00007000050d1a60 R13 = 0000000112dfe3c7
> R14 = 00007000050d1ad0 R15 = 000000011d443777
>
> RIP = 0000000117f94f40 RFL = 00007fb47691da70
>
> CS = 00009b6300305bc3 FS = 000000011d44376a GS = 00007fb47210a9e8
>
> Stack Trace (from fault):
> [ 0] 0x0000000107817e64
> /Applications/freesurfer/MCRv84//bin/maci64/libmwfl.dylib+00028260
> _ZN2fl4diag15stacktrace_base7captureERKNS0_14thread_contextEm+00000052
> [ 1] 0x000000010781ba2a
> /Applications/freesurfer/MCRv84//bin/maci64/libmwfl.dylib+00043562
> _ZN2fl4test17terminate_handledEv+00000906
> [ 2] 0x000000010781b477
> /Applications/freesurfer/MCRv84//bin/maci64/libmwfl.dylib+00042103
> _ZN2fl4diag13terminate_logEPKcPK17__darwin_ucontext+00000119
> [ 3] 0x000000010e399b7a
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00387962
> _Z32mnRunPathDependentInitializationv+00003146
> [ 4] 0x000000010e399e58
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00388696
> _Z32mnRunPathDependentInitializationv+00003880
> [ 5] 0x000000010e397733
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00378675
> mnFatalSignalHandler+00000275
> [ 6] 0x00007fff6b0d9b3d
> /usr/lib/system/libsystem_platform.dylib+00019261 _sigtramp+00000029
> [ 7] 0x0000000112dff6f8
> /Applications/freesurfer/MCRv84/sys/java/jre/maci64/jre//lib/server/libjvm.dylib+03192568
> _ZN23JNI_ArgumentPusherVaArg7iterateEy+00000000
> [ 8] 0x0000000112defd67
> /Applications/freesurfer/MCRv84/sys/java/jre/maci64/jre//lib/server/libjvm.dylib+03128679
> jni_GetMethodID+00000126
> [ 9] 0x00000001117b1271
> /Applications/freesurfer/MCRv84//bin/maci64/libmwjmi.dylib+00160369
> _Z12mljGetMethodP7_jclassPKcS2_+00000049
> [ 10] 0x000000011cc9e366
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00598886
> _ZN2ui14JavaScreenData20getPrimaryScreenRectEv+00000150
> [ 11] 0x000000011cca323a
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00619066
> _ZN10gbtobjects10ScreenData14getScreenWidthEv+00000010
> [ 12] 0x000000011ccba1a6
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00713126
> _ZN2ui9container9Container16getChildRefFrameEv+00000038
> [ 13] 0x000000011ccba55e
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00714078
> _ZN2ui9container9Container20fillInUpdateViewInfoERN7hgutils14UpdateViewInfoE+00000046
> [ 14] 0x000000011cca74d6
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00636118
> _ZN2ui4Root20fillInUpdateViewInfoERN7hgutils14UpdateViewInfoE+00000022
> [ 15] 0x000000011cca279a
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+00616346
> _ZN10gbtobjects13UpdateVisitor5applyERN2ui4RootE+00000218
> [ 16] 0x000000011cdb7f9a
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+01752986
> _ZN10gbtobjects20CommitUpdatesManager13performUpdateEv+00000122
> [ 17] 0x000000011cdb807b
> /Applications/freesurfer/MCRv84//bin/maci64/libmwhg.dylib+01753211
> _ZN10gbtobjects20CommitUpdatesManager24commitAllDatabaseUpdatesEbb+00000027
> [ 18] 0x00000001057147c8
> /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+01124296
> _Z26svWS_CommitDatabaseUpdates27svCommitDatabaseUpdatesType+00000152
> [ 19] 0x00000001056fce2f
> /Applications/freesurfer/MCRv84//bin/maci64/libmwservices.dylib+01027631
> _Z25svWS_ProcessPendingEventsiib+00000031
> [ 20] 0x000000010e35818f
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00119183
> _ZN3mcr7runtime17InterpreterThread4Impl14process_eventsERKN5boost10shared_ptrIS2_EE+00000095
> [ 21] 0x000000010e35849f
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00119967
> _ZN3mcr7runtime17InterpreterThread4Impl3runERKN5boost10shared_ptrIS2_EEPNS2_12init_contextE+00000335
> [ 22] 0x000000010e33ed1b
> /Applications/freesurfer/MCRv84//bin/maci64/libmwmcr.dylib+00015643
> _Z26run_init_and_handle_eventsPv+00000059
> [ 23] 0x00007fff6b0e233d
> /usr/lib/system/libsystem_pthread.dylib+00013117 _pthread_body+00000126
> [ 24] 0x00007fff6b0e52a7
> /usr/lib/system/libsystem_pthread.dylib+00025255 _pthread_start+00000070
> [ 25] 0x00007fff6b0e1425
> /usr/lib/system/libsystem_pthread.dylib+00009253 thread_start+00000013
>
>
> If this problem is reproducible, please submit a Service Request via:
> http://www.mathworks.com/support/contact_us/
>
> A technical support engineer might contact you with further information.
>
> Thank you for your help.** This crash report has been saved to disk as
> /Users/jaime/matlab_crash_dump.9878-2 **
>
>
>
> MATLAB is exiting because of fatal error
> /Applications/freesurfer/bin/run_segmentSubjectT1_autoEstimateAlveusML.sh:
> line 37: 9878 Killed: 9
> "${exe_dir}"/segmentSubjectT1_autoEstimateAlveusML.app/Contents/MacOS/segmentSubjectT1_autoEstimateAlveusML
> $args
> Darwin jaimes-Mac-Pro.local 18.0.0 Darwin Kernel Version 18.0.0: Wed Aug
> 22 20:13:40 PDT 2018; root:xnu-4903.201.2~1/RELEASE_X86_64 x86_64
>
> T1 hippocampal subfields exited with ERRORS at Tue Oct 30 13:06:10 CET 2018
>
> For more details, see the log file
> /Users/jaime/vallecas/data/uma/Subject_UMA_0018/UIPA11REV/003_SAG_3D_IR//sujeto_uno/scripts/hippocampal-subfields-T1.log
>
> --
>
> Jaime Gomez-Ramirez, PhD
>
> Department of NeuroImaging
>
> Centre for Research in Neurodegenarative Diseases
>
> Fundación Reina Sofia
> <http://www.fundacionreinasofia.es/EN/Paginas/home.aspx>
>
> Valderrebollo, 5 Madrid, Spain
> _______________________________________________
> Freesurfer mailing list
> [email protected]
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
--
Jaime Gomez-Ramirez, PhD
Department of NeuroImaging
Centre for Research in Neurodegenarative Diseases
Fundación Reina Sofia
<http://www.fundacionreinasofia.es/EN/Paginas/home.aspx>
Valderrebollo, 5 Madrid, Spain
_______________________________________________
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