Hi Nazain

I can't replicate this problem. Can you verify that the aseg.mgz is correct? If it is, maybe email me those 3 files as well as the complete output of mri_convert?

cheers
Bruce
On Fri, 25 Jan 2019, N Saf wrote:


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Dear Bruce,
I had a problem with bringing aseg.mgz into my subject space and you recommend 
this command before:

mri_convert -rl rawavg.mgz -rt nearest aseg.mgz aseg.resliced.mgz

which perfectly worked for me but now when I want to try it in
 new version6 it does not work and the aseg.resliced file contains just corpus callosum!, I don't know which I do wrong because it worked before and still work with the analysis which I done with last version. would you please
help me to figure it out?thank you very much for your help.

best regards,

Nazain

PS:the link of previous mail:https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg50794.html



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