External Email - Use Caution Thank you for the reply! I run: mri_vol2vol --reg register.dat --mov func_data.nii.gz --targ /usr/local/freesurfer/subjects/sub3/mri/T1.mgz --o func_data_registered2T1.nii.gz --no-resample
Then I checked the registration and it seems that the original run is better aligned to the T1 than the registered one. Maybe am I not running mri_vol2vol correctly? Thanks! Best Il giorno mar 12 feb 2019 alle ore 02:19 Bruce Fischl < fis...@nmr.mgh.harvard.edu> ha scritto: > Hi Francesca > > check out the --no-resample option in mri_vol2vol. It just changes the > header, so I think should do what you want. > > cheers > Bruce > > > On Tue, 12 Feb 2019, Francesca Strappini wrote: > > > > > External Email - Use Caution > > > > Dear Freesurfer's experts, > > > > I would like to register some functional data to the T1, that were > collected in separate days. > > I used bbregister: > > > > bbregister --s sub3 --mov func_data.nii.gz - --reg register.dat > --init-coreg --t1 > > > > Now, I would like to resample the data based on the register.dat without > upsampling and keeping the > > same FoV (3x3x3 mm; 64 64 50). Is it doable? > > > > Thanks! > > Best > > > > > > -- > > Francesca Strappini, Ph.D. > > Neurobiology Department > > Weizmann Institute of Science > > 234 Herzl Street, Rehovot 7610001 Israel > > Tel.: +972 58 444 2584 > > E-mail: francesca.strapp...@weizmann.ac.il > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Francesca Strappini, Ph.D. Neurobiology Department Weizmann Institute of Science 234 Herzl Street, Rehovot 7610001 Israel Tel.: +972 58 444 2584 E-mail: francesca.strapp...@weizmann.ac.il
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